GgaEX1063105 @ galGal4
Exon Skipping
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4584979-4586736:+
Coord C1 exon
chr2:4584979-4585116
Coord A exon
chr2:4585679-4585837
Coord C2 exon
chr2:4586557-4586736
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGGTATCTCTTCTACCCAAGGGT
3' ss Score
4.94
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGTGGAGAATTGAGGACCTGCAAATGCAGCCGGTGGATCCCAAGACATACGGGCAGTTCTACGGAGGTGATTGCTACCTGGTCCTGTACACCTACCTCAGATCTGGCCGGCCTCACTATGTCCTCTACATGTGGCAG
Seq A exon
GGTCGCCACGCCTCTGTGGATGAAATCACTGCCTGTGCCCTCAATGCCATCGAGTTGGACAAAAAGCATGGGGATGAGGCTGTGCAGGTGCGCGTGACAATGGGGAAGGAGCCAACACACTTCCTGGCAATCTTCAAGGGCAAGCTGATCATTTACGAG
Seq C2 exon
GGTGGCACAAGCCGGGCCCAGAAAAGCACCCCCGAGCCAGCAATACGCCTCTTCCAGGTGAGAGGCACAAATGAGATGAACACCAAGGCCACGGAGGTGCCAGCCCGGGCCTCCTCTCTCAACTCCAATGATGTATTCCTGCTAGCAACCAACCAAGTCTGCTACCTGTGGTGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'18-16,'18-15,21-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.133
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGACATACGGGCAGTTC
R:
ACTTGGTTGGTTGCTAGCAGG
Band lengths:
257-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]