DreEX6094738 @ danRer10
Exon Skipping
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20284089-20287506:-
Coord C1 exon
chr24:20287369-20287506
Coord A exon
chr24:20285099-20285257
Coord C2 exon
chr24:20284089-20284268
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATGAAGCTTGTGTTCTGTAGGGT
3' ss Score
5.58
5' ss Seq
GAGGTGATC
5' ss Score
3.49
Exon sequences
Seq C1 exon
GTTTGGCGGATCGAGAATCTTGAACTCAAGGAAGTGGATCGAAGCACTTATGGACAGTTTTATGGAGGAGACTGTTATCTAGTTTTGTACACCTACAACAGAGCCAACAAACCTCAGTATATCCTCTACATCTGGCAG
Seq A exon
GGTCGTCACGCCACACAGGATGAGGTGACGGCATCCGCTTATCAGGCAGTCAATTTGGATAACAAATACAATGGAGCCCCAACACAGGTCCGAGTGGTCATGGGAAAAGAACCCAGACACTTCATGGCCATCTTTAAAGGCCGACTCATCATCTTCGAG
Seq C2 exon
GGTGGCACAGGCCGGTCGGGTGTTGTGAACCCTGATCCTGCTGCCAGACTCTTCCAGGTCAGAGGAACACATGAGCTGAACACAAAGGCCACAGAGGTTCCCGCCCGAGCCTCTTCTCTCAACACCAATGACGTCTTTCTGCTCAAAACATATCAGACTGTTTTCCTGTGGTACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909-'14-19,'14-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.100
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PU(47.8=55.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGATCGAGAATCTTGAACT
R:
TGTTGAGAGAAGAGGCTCGGG
Band lengths:
258-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]