GgaEX1063105 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:4513873-4515630:+
Coord C1 exon
chr2:4513873-4514010
Coord A exon
chr2:4514573-4514731
Coord C2 exon
chr2:4515451-4515630
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGGTATCTCTTCTACCCAAGGGT
3' ss Score
4.94
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGTGGAGAATTGAGGACCTGCAAATGCAGCCGGTGGATCCCAAGACATACGGGCAGTTCTACGGAGGTGATTGCTACCTGGTCCTGTACACCTACCTCAGATCTGGCCGGCCTCACTATGTCCTCTACATGTGGCAG
Seq A exon
GGTCGCCACGCCTCTGTGGATGAAATCACTGCCTGTGCCCTCAATGCCATCGAGTTGGACAAAAAGCATGGGGATGAGGCTGTGCAGGTGCGCGTGACAATGGGGAAGGAGCCAACACACTTCCTGGCAATCTTCAAGGGCAAGCTGATCATTTACGAG
Seq C2 exon
GGTGGCACAAGCCGGGCCCAGAAAAGCACCCCCGAGCCAGCAATACGCCTCTTCCAGGTGAGAGGCACAAATGAGATGAACACCAAGGCCACGGAGGTGCCAGCCCGGGCCTCCTCTCTCAACTCCAATGATGTATTCCTGCTAGCAACCAACCAAGTCTGCTACCTGTGGTGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.167
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGACATACGGGCAGTTC
R:
ACTTGGTTGGTTGCTAGCAGG
Band lengths:
257-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]