BtaEX0040424 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017743 | XIRP2
Description
xin actin-binding repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:14303]
Coordinates
chr2:29099907-29126270:-
Coord C1 exon
chr2:29126133-29126270
Coord A exon
chr2:29100398-29100508
Coord C2 exon
chr2:29099907-29099979
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATTCATTCATTCATTTTCAGGAG
3' ss Score
8.17
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATGCTGGAAGAATCAGAAATGTGCACAGTACCTGGTGGTTTGGCCAGAGTGAAGAAACAGTTTGAGAAGGACAAAATTGCTTCTTCCTCTAATACCTTCACTCAGTACCAATACCAACACCAGAACAGATCTGAGCAG
Seq A exon
GAGGTAATCCGTAGCAGCCAGGTCGACATTTCAAGATGCAGCCAGGAAATGGAAAGAAATGAACCAGAAATTTCCGAAGCACACAAAATTGATGTTCTTGGAACAGAAATG
Seq C2 exon
GTCTCTCATCTTGAAAAACACACTGAGGAAATAAACCAAGCTTCTAAGCTCCATCAATATGTTCAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017743_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=0.931 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAAGAATCAGAAATGTGC
R:
CTGTTTCTTGAACATATTGATGGAGC
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development