RnoEX6017213 @ rn6
Exon Skipping
Gene
ENSRNOG00000034258 | Xirp2
Description
xin actin-binding repeat containing 2 [Source:RGD Symbol;Acc:1302980]
Coordinates
chr3:53599210-53631017:+
Coord C1 exon
chr3:53599210-53599347
Coord A exon
chr3:53630479-53630565
Coord C2 exon
chr3:53630945-53631017
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTCCAACTGCTCATTTTCAGGAG
3' ss Score
7.03
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
GTCGTGGAAGAATCAGACTTGTGCACCGTGCCTGGTGGTTTAGCCAAGATGAAGAGACAATTTGAAAAGGATGAAATGACTTCAACCTGCAATGCCTTCTCTGAGTATCAATACCAACATGAGAGCAGATCTGAGCAG
Seq A exon
GAGGCAATCCACAACAGGCAAGAAATAAGAAGGAATGAAGAAGAAGTTTCTAAAGGACACAGAACTGATGTCTTCAAAGCTGAAATG
Seq C2 exon
ATGTCACATCTTGAAAAGCACACGGAGGAAACAAACCAAGCTTCACAGTTTCGTCAATATGTTCAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034258-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.609 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGACTTGTGCACCGTGC
R:
AGCTTGGTTTGTTTCCTCCGT
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]