DreEX6020609 @ danRer10
Exon Skipping
Gene
ENSDARG00000071113 | xirp2a
Description
xin actin-binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
Coordinates
chr6:9950627-9953510:-
Coord C1 exon
chr6:9953376-9953510
Coord A exon
chr6:9950868-9950936
Coord C2 exon
chr6:9950627-9950693
Length
69 bp
Sequences
Splice sites
3' ss Seq
GGTGTTGTCTGTCTTTAAAGCAG
3' ss Score
5.33
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTCATGGACAGCTCTGAGCCGTGCTCTCTGCCAGGTGGACTGGCCAGCGTGAAGAAACAATTTGAAAGCCAAGAGTTAAGCTCCTCTTCTGCATCCCAAAGCACTGTTGCACAGTACCACTACCAGCAGAGACAG
Seq A exon
CAGGTGGTGAGCTCATCAGAGGTGACAGTACGAAGCAGTGTTAAAGAAAGCAGTACCTCAAATGCTCAG
Seq C2 exon
GTTTCTCTGGACAAGAATGTTCAACAGAGTGTGGCCTCCAGTTTTGGCGATCATTATGATGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071113-'8-11,'8-9,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=0.870 C2=0.239
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGGACAGCTCTGAGCC
R:
GGAGGCCACACTCTGTTGAAC
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]