HsaEX0071719 @ hg19
Exon Skipping
Gene
ENSG00000163092 | XIRP2
Description
xin actin-binding repeat containing 2 [Source:HGNC Symbol;Acc:14303]
Coordinates
chr2:168074676-168097246:+
Coord C1 exon
chr2:168074676-168074810
Coord A exon
chr2:168096365-168096475
Coord C2 exon
chr2:168097174-168097246
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTGTGTGCTTTCAGGAG
3' ss Score
10.72
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATGATGGAAGAATCAGAAATGTGCGCAGTGCCTGGTGGTTTGGCCAAGGTGAAGAAACAATTTGAGGACGAAATTACTTCTTCCCGTAATACCTTTGCTCAATACCAATATCAACATCAGAACAGATCTGAGCAG
Seq A exon
GAGGCAATTCATAGCAGCCAGGTTGGCACTTCAAGAAGCAGCCAGGAAATGGCAAGAAATGAACAAGAAGGGTCCAAAGTACAGAAAATTGATGTTCATGGAACAGAAATG
Seq C2 exon
GTCTCTCATCTTGAAAAGCACACCGAGGAAGTAAACCAAGCATCTCAGTTTCATCAATATGTTCAAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163092_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.689 A=1.000 C2=0.782
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0231811=FYVE_2=PU(15.7=72.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAATCAGAAATGTGCGCA
R:
TGAACATATTGATGAAACTGAGATGC
Band lengths:
195-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)