HsaEX0071719 @ hg38
Exon Skipping
Gene
ENSG00000163092 | XIRP2
Description
xin actin binding repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:14303]
Coordinates
chr2:167218166-167240736:+
Coord C1 exon
chr2:167218166-167218300
Coord A exon
chr2:167239855-167239965
Coord C2 exon
chr2:167240664-167240736
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTGTGTGCTTTCAGGAG
3' ss Score
10.72
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATGATGGAAGAATCAGAAATGTGCGCAGTGCCTGGTGGTTTGGCCAAGGTGAAGAAACAATTTGAGGACGAAATTACTTCTTCCCGTAATACCTTTGCTCAATACCAATATCAACATCAGAACAGATCTGAGCAG
Seq A exon
GAGGCAATTCATAGCAGCCAGGTTGGCACTTCAAGAAGCAGCCAGGAAATGGCAAGAAATGAACAAGAAGGGTCCAAAGTACAGAAAATTGATGTTCATGGAACAGAAATG
Seq C2 exon
GTCTCTCATCTTGAAAAGCACACCGAGGAAGTAAACCAAGCATCTCAGTTTCATCAATATGTTCAAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163092_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.678 A=1.000 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAATCAGAAATGTGCGCA
R:
TGAACATATTGATGAAACTGAGATGC
Band lengths:
195-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development