MmuEX6101806 @ mm10
Exon Skipping
Gene
ENSMUSG00000027022 | Xirp2
Description
xin actin-binding repeat containing 2 [Source:MGI Symbol;Acc:MGI:2685198]
Coordinates
chr2:67482246-67526614:+
Coord C1 exon
chr2:67482246-67482383
Coord A exon
chr2:67505034-67505123
Coord C2 exon
chr2:67524772-67526614
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCAAATTGCTCATCTTCAGGAG
3' ss Score
6.06
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
GTCATGGAAGAATCAGATGTGTGCACCGTGCCTGGTGGTTTAGCCAAGATGAAAAGACAATTTGAGAAGGATAAAATGACTTCAACCTGCAACGCCTTTTCTGAGTATCAGTACCGACATGAGAGCAGAGCTGAGCAG
Seq A exon
GAGGCAATCCACAGCAGTCAAGAAATAATAAGAAGGAATGAACAAGAAGTTTCTAAAGGACATGGAACTGATGTCTTCAAAGCAGAAATG
Seq C2 exon
CTTGGGAAATTACGCATCACTTCACGGACGAATATACTGCAAGCCTCATTTTAAACAACTTTTTAAGTCTAAAGGAAATTATGATGAAGGGTTTGGACACAAGCAACATAAAGATCGATGGAATTGCAAAAACCAAAGCAGCTTAGTTGATTTTATTCCCAGCGGAGAGCCCGATGCGCATGAAAACCCTACAGCAGATACCCTCTTGCTTGGGGATCTTACTACCCACCCAGATGCTTGTAACAGCAAGCGGCAAGACAATGATTTGAGAAAATGGGGGGACAGGGGGAAATTAAAAATTGTTTGGCCTCCTTGTCAGGAGATGCCTAAGAAAAACTCTCCCCCTGAGGAAGAATTCAAAGTGAATAAAGCTAAGTGGCCGCCTGAAGTGACCATCCCTGTTCCCTCAGATTTTAAAAGGGAGTCGCTGACCGAACATGTGAAGACATTGGAAAGTCAAGGGCAAGAACAAGATAGCGTCCCTGACTTGCAGCCCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027022_MULTIEX1-2/6=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=1.000 C2=0.418
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PD(36.8=4.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAACCTGCAACGCCTTT
R:
TGTTGCTTGTGTCCAAACCCT
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types