MmuEX6101806 @ mm9
Exon Skipping
Gene
ENSMUSG00000027022 | Xirp2
Description
xin actin-binding repeat containing 2 [Source:MGI Symbol;Acc:MGI:2685198]
Coordinates
chr2:67320303-67343632:+
Coord C1 exon
chr2:67320303-67320440
Coord A exon
chr2:67343091-67343180
Coord C2 exon
chr2:67343560-67343632
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCAAATTGCTCATCTTCAGGAG
3' ss Score
6.06
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
GTCATGGAAGAATCAGATGTGTGCACCGTGCCTGGTGGTTTAGCCAAGATGAAAAGACAATTTGAGAAGGATAAAATGACTTCAACCTGCAACGCCTTTTCTGAGTATCAGTACCGACATGAGAGCAGAGCTGAGCAG
Seq A exon
GAGGCAATCCACAGCAGTCAAGAAATAATAAGAAGGAATGAACAAGAAGTTTCTAAAGGACATGGAACTGATGTCTTCAAAGCAGAAATG
Seq C2 exon
ATGTCACATCTTGAAAAGCACACTGAGGAAACAAAGCAAGCTTCACAGTTTCATCAATATGTTCAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027022-'4-7,'4-6,5-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=1.000 C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCAGATGTGTGCACCGT
R:
TGCTTTGTTTCCTCAGTGTGCT
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: