BtaEX6001407 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013755 | ITGB5
Description
Bos taurus integrin, beta 5 (ITGB5), mRNA. [Source:RefSeq mRNA;Acc:NM_174679]
Coordinates
chr1:69832284-69848987:-
Coord C1 exon
chr1:69848898-69848987
Coord A exon
chr1:69841925-69842059
Coord C2 exon
chr1:69832284-69832713
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCTCTCTCTGTTCAGAGC
3' ss Score
11.35
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
AATTTTACAGCCCTGATACCTGGAACAACAGTGGAGATTTTACATGGAGACTCCAAAAATATTCTTCAACTGATTATCAATGCATACAAC
Seq A exon
AGCATCCGGTCTAAAGTGGAGCTGTCTGTCTGGGATCAGCCTGAGGATCTTAATCTCTTCTTCACTGCTACCTGCCAGGACGGTGTATCCTACCCTGGTCAGAGGAAGTGCGAGGGCCTGAAGATCGGGGACACG
Seq C2 exon
GCGTCCTTTGAGGTGTCGGTGGAGGCCCGGAGCTGCCCCAGCAAGCACGTGCAGCACACGTTCACCCTGCGGCCCGTGGGCTTCCGGGACAGCCTGGAGGTGGGGGTCACCTACAACTGCAGGTGCGGCTGCAGCGCGGGGCTGGAACCCGACAGCGCCAGGTGCAGCAGCAACGGGACTTACGTCTGCGGCCTGTGTGAGTGCAACCCCGGCTACCTGGGTACCAGGTGCGAGTGCCAGGAAGGCGAGAGCCAGAGCGGGTACCAGAACCTGTGCCGGGAGGCGGAGGGTAAGCCACTGTGCAGCGGGCGCGGCCAGTGCAGCTGCAACCAGTGCTCCTGCTTCGAGAGCGAGTTTGGCAAGATCTACGGGTCCTTCTGCGAGTGCGACAACTTCTCCTGCGCCAGGAACAAAGGTGTCCTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013755-'15-21,'15-15,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(7.0=100)
A:
PF0036213=Integrin_beta=FE(10.7=100)
C2:
PF0036213=Integrin_beta=PD(10.0=28.5),PF126612=hEGF=WD(100=9.0),PF079748=EGF_2=WD(100=25.0),PF079748=EGF_2=PU(32.3=6.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAACAACAGTGGAGAT
R:
CGTAAGTCCCGTTGCTGCTG
Band lengths:
257-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]