MmuEX6062081 @ mm10
Exon Skipping
Gene
ENSMUSG00000022817 | Itgb5
Description
integrin beta 5 [Source:MGI Symbol;Acc:MGI:96614]
Coordinates
chr16:33902794-33920214:+
Coord C1 exon
chr16:33902794-33902883
Coord A exon
chr16:33910465-33910599
Coord C2 exon
chr16:33919785-33920214
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCCTTTGTTTTCAGAGC
3' ss Score
11.9
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
AATTTTACAGCCCTGATACCTGGAACCACTGTGGAGATTTTGCATGGAGATTCCAAAAATATTATTCAACTGATTATCAATGCGTACAGT
Seq A exon
AGCATCCGGGCTAAAGTGGAGCTGTCAGTGTGGGATCAGCCAGAAGACCTTAATCTCTTCTTCACTGCCACCTGCCAAGATGGCATATCTTACCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATTGGGGACACG
Seq C2 exon
GCATCCTTTGAAGTGTCCGTGGAGGCTCGGAGCTGCCCCGGCAGACAAGCAGCACAGTCTTTCACCTTGAGGCCCGTGGGCTTCCGGGACAGTCTGCAGGTGGAAGTCGCCTACAATTGCACATGCGGCTGTAGCACGGGGCTGGAGCCCAACAGTGCCAGATGCAGTGGGAATGGAACATACACCTGTGGGCTGTGCGAGTGTGACCCCGGCTACCTGGGCACTAGGTGCGAGTGCCAGGAGGGGGAGAACCAGAGCGGGTACCAGAACCTGTGCCGGGAGGCAGAGGGCAAGCCTCTGTGCAGCGGGCGTGGAGAGTGTAGCTGCAACCAGTGCTCCTGCTTCGAGAGTGAGTTCGGGAGGATCTACGGACCTTTCTGCGAGTGTGACAGCTTTTCCTGTGCCAGAAACAAGGGCGTCCTATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022817-'21-23,'21-19,25-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(6.8=100)
A:
PF0036213=Integrin_beta=FE(10.3=100)
C2:
PF0036213=Integrin_beta=PD(9.6=28.5),PF079748=EGF_2=WD(100=25.0),PF079748=EGF_2=PU(32.3=6.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAACCACTGTGGAGAT
R:
TTCCATTCCCACTGCATCTGG
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types