HsaEX0032476 @ hg19

Exon Skipping

Gene

ENSG00000082781 | ITGB5

Description

integrin, beta 5 [Source:HGNC Symbol;Acc:6160]

Coordinates

chr3:124515235-124536557:-

Coord C1 exon

chr3:124536468-124536557

Coord A exon

chr3:124527869-124528003

Coord C2 exon

chr3:124515235-124515664

Length

135 bp

Sequences

Splice sites

3' ss Seq

CATTTTCTCTCTCCATTCAGAGT

3' ss Score

10.75

5' ss Seq

ACGGTAAGT

5' ss Score

11.81

Exon sequences

Seq C1 exon

AATTTTACAGCCCTGATACCTGGAACAACGGTGGAGATTTTAGATGGAGACTCCAAAAATATTATTCAACTGATTATTAATGCATACAAT

Seq A exon

AGTATCCGGTCTAAAGTGGAGTTGTCAGTCTGGGATCAGCCTGAGGATCTTAATCTCTTCTTTACTGCTACCTGCCAAGATGGGGTATCCTATCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATTGGGGACACG

Seq C2 exon

GCATCTTTTGAAGTATCATTGGAGGCCCGAAGCTGTCCCAGCAGACACACGGAGCATGTGTTTGCCCTGCGGCCGGTGGGATTCCGGGACAGCCTGGAGGTGGGGGTCACCTACAACTGCACGTGCGGCTGCAGCGTGGGGCTGGAACCCAACAGCGCCAGGTGCAACGGGAGCGGGACCTATGTCTGCGGCCTGTGTGAGTGCAGCCCCGGCTACCTGGGCACCAGGTGCGAGTGCCAGGATGGGGAGAACCAGAGCGTGTACCAGAACCTGTGCCGGGAGGCAGAGGGCAAGCCACTGTGCAGCGGGCGTGGGGACTGCAGCTGCAACCAGTGCTCCTGCTTCGAGAGCGAGTTTGGCAAGATCTATGGGCCTTTCTGTGAGTGCGACAACTTCTCCTGTGCCAGGAACAAGGGAGTCCTCTGCTCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000082781_MULTIEX1-4/4=3-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF0036213=Integrin_beta=FE(26.5=100),PF0036213=Integrin_beta=PU(0.1=0.0)

A:

PF0036213=Integrin_beta=PD(2.1=6.5),PF0036213=Integrin_beta=FE(48.9=100)

C2:

PF0036213=Integrin_beta=PD(1.8=1.4),PF0036213=Integrin_beta=WD(100=29.9),PF079748=EGF_2=WD(100=20.1),PF079748=EGF_2=WD(100=27.1),PF079748=EGF_2=PU(29.0=6.2)

Main Inclusion Isoform:

ENSP00000296181