RnoEX0045241 @ rn6
Exon Skipping
Gene
ENSRNOG00000001795 | Itgb5
Description
integrin subunit beta 5 [Source:RGD Symbol;Acc:628869]
Coordinates
chr11:70086253-70103220:-
Coord C1 exon
chr11:70103131-70103220
Coord A exon
chr11:70096410-70096544
Coord C2 exon
chr11:70086253-70086682
Length
135 bp
Sequences
Splice sites
3' ss Seq
CATTCTCTCCCTTTGTTCAGAGC
3' ss Score
8.95
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
AATTTTACAGCCCTGATACCTGGAACCACTGTGGAGATTTTGCATGGAGATTCCAAAAATATTATTCAACTGATTATCAATGCGTACAGT
Seq A exon
AGCATCCGGGCTAAAGTGGAGCTGTCGGTCTGGGATCAGCCGGAAGACCTTAATCTCTTCTTCACTGCTACGTGCCAAGATGGCCTATCCTACCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATCGGGGACACG
Seq C2 exon
GCGTCCTTTGAAGTGTCTGTGGAGGCTCGGAGCTGCCCTGGCAGACATACAACACAGTCTTTTACCTTGAGGCCTGTGGGCTTCCGGGACAGTCTGCAGGTAGAAGTCGCCTACAACTGCACGTGCGGCTGTAGCGCCGGGCTGGAGCCCAACAGTGCCAGATGCAGTGGGAATGGAACATACGTCTGTGGGCTGTGCGAGTGTGACCCCAGTTACCTGGGCACTAGGTGCGAGTGCCAGGAGGGCGAGAACCAGAGCGGGTACCAGAACCTGTGCCGGGAGGCGGAAGGCAAACCCCTGTGCAGCGGACGTGGGGAATGCAGCTGCAACCAGTGCTCCTGCTTTGAGAGTGAGTTCGGGAGGATCTACGGGCCCTTCTGCGAGTGCGACAGCTTTTCCTGTGCCAGGAACAAGGGCGTCCTATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001795-'18-12,'18-11,19-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAACCACTGTGGAGAT
R:
TTCCATTCCCACTGCATCTGG
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]