HsaEX0032476 @ hg38
Exon Skipping
Gene
ENSG00000082781 | ITGB5
Description
integrin subunit beta 5 [Source:HGNC Symbol;Acc:HGNC:6160]
Coordinates
chr3:124796388-124817710:-
Coord C1 exon
chr3:124817621-124817710
Coord A exon
chr3:124809022-124809156
Coord C2 exon
chr3:124796388-124796817
Length
135 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTCTCTCCATTCAGAGT
3' ss Score
10.75
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
AATTTTACAGCCCTGATACCTGGAACAACGGTGGAGATTTTAGATGGAGACTCCAAAAATATTATTCAACTGATTATTAATGCATACAAT
Seq A exon
AGTATCCGGTCTAAAGTGGAGTTGTCAGTCTGGGATCAGCCTGAGGATCTTAATCTCTTCTTTACTGCTACCTGCCAAGATGGGGTATCCTATCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATTGGGGACACG
Seq C2 exon
GCATCTTTTGAAGTATCATTGGAGGCCCGAAGCTGTCCCAGCAGACACACGGAGCATGTGTTTGCCCTGCGGCCGGTGGGATTCCGGGACAGCCTGGAGGTGGGGGTCACCTACAACTGCACGTGCGGCTGCAGCGTGGGGCTGGAACCCAACAGCGCCAGGTGCAACGGGAGCGGGACCTATGTCTGCGGCCTGTGTGAGTGCAGCCCCGGCTACCTGGGCACCAGGTGCGAGTGCCAGGATGGGGAGAACCAGAGCGTGTACCAGAACCTGTGCCGGGAGGCAGAGGGCAAGCCACTGTGCAGCGGGCGTGGGGACTGCAGCTGCAACCAGTGCTCCTGCTTCGAGAGCGAGTTTGGCAAGATCTATGGGCCTTTCTGTGAGTGCGACAACTTCTCCTGTGCCAGGAACAAGGGAGTCCTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082781_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(26.5=100),PF0036213=Integrin_beta=PU(0.1=0.0)
A:
PF0036213=Integrin_beta=PD(0.1=0.0),PF0036213=Integrin_beta=FE(50.0=100)
C2:
PF0036213=Integrin_beta=PD(1.8=1.4),PF0036213=Integrin_beta=WD(100=29.9),PF079748=EGF_2=PU(29.0=6.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGGAACAACGGTGGAGA
R:
ATAGGTCCCGCTCCCGTTG
Band lengths:
257-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development