DreEX0040179 @ danRer10
Exon Skipping
Gene
ENSDARG00000012942 | itgb5
Description
integrin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6022]
Coordinates
chr9:22884766-22896648:+
Coord C1 exon
chr9:22884766-22884855
Coord A exon
chr9:22886703-22886837
Coord C2 exon
chr9:22896219-22896648
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTGCTTTTGTGTAGAAC
3' ss Score
7.73
5' ss Seq
ACTGTTAGT
5' ss Score
-3.84
Exon sequences
Seq C1 exon
AACCTCACTGCGTTGATCCCTGGGACTACAGTGGAAATTTTGGACCAGGACTCCAAAAACATCATTCAACTAATTGTGAATGCCTACAAT
Seq A exon
AACATAAGGTCAAAAGTTGAGCTGAGCGTGTGGGATCATCCTGAAGATCTCAGTCTGGCCTTCTCCGCTACCTGTCAAGATGGACAGCCCCTGACCGGTCTCCGCAAGTGCGCCGACCTCAAAATTGGTGACACT
Seq C2 exon
GTCTCCTTCAATGTAACTGTAGACGCTCGAGGATGTCCTCCGAAAGGCACCAGGAAGAGTTTCACCATCAGGCCTGTTGGTTTTAAAGACCGTCTAGAGGTTTCTGTGGATTACCGCTGTGATTGCCGCTGCACGTATCACACAAAGCCGAACAGCAGCCGCTGCAACTCTGCTGGCACTTACAACTGTGGGTTGTGCCGGTGTGAGCCTGGGTATCTGGGAGCCCGCTGCGAGTGCCAGGAGGGTGAGGTGGACCACCAGCACCTCAGTGCCTGTCGAGAAGCAGAGGGCAAGCAGGTGTGCAGTGGTCGTGGAGAATGCAGCTGTAACCAGTGCCTGTGCTATGAGTCAGAGTTTGGCAAGATCTACGGCACCTTCTGCGAATGTGACGACTTCTCCTGTGCCCGACACAAGGGCATACTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012942-'9-15,'9-13,11-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(6.7=100)
A:
PF0036213=Integrin_beta=FE(10.2=100)
C2:
PF0036213=Integrin_beta=PD(9.5=28.5),PF126612=hEGF=WD(100=9.0),PF079748=EGF_2=PU(32.3=6.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCACTGCGTTGATCCCT
R:
TGCTGTTCGGCTTTGTGTGAT
Band lengths:
247-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]