GgaEX6042970 @ galGal4
Exon Skipping
Gene
ENSGALG00000011778 | ITGB5
Description
integrin beta-5 precursor [Source:RefSeq peptide;Acc:NP_989814]
Coordinates
chr7:27390341-27394979:-
Coord C1 exon
chr7:27394890-27394979
Coord A exon
chr7:27392623-27392757
Coord C2 exon
chr7:27390341-27390770
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCATTGTGTTTCTAGAGC
3' ss Score
9.14
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
AACTTCACTGCTTTGATTCCTGGGACCACAGTGGAGATTTTGCATAAGGACTCCAAGAATATCATCGAGCTGATCGTCAAGGCCTACAAC
Seq A exon
AGCATTCGGTCCAAAGTAGAACTCACTGTCTGGGACAGCCCTGAGGACATTGGCTTGACCTTCACTGCCACCTGCCAGGATGGATTGTCCTATCCTGGGCTCAGAAAATGTGGAGATCTCAAGATAGGAGATACG
Seq C2 exon
GTTTCCTTCGAGGTGTCGGTGGAGGCCCGCAGCTGCCCGGCTGAGGACACTTCCCACGTCTTCACCATCAAGCCAGCCGGCTTCCGTGACACACTGGAGGTGACTGTCACCTACAACTGCCTGTGTGGCTGCACCGGCCTCGCGGAGCCAGCCAGCGGCAAGTGCAGCGGCAATGGGACCTATGCCTGCGGGCTGTGCGAGTGCGATGCCGGCTACCTGGGGGCCCGCTGTGAATGTGAGGAGGGGGCCGGCGGGGAGACCCAGCCCGGGCTGTGCCGTGAGGTGGAGGGAAAGCCCGTCTGCAGCGGGCGGGGGGAATGCAGCTGTAACCAGTGCGTCTGCTATGAGAGCGAGTTCGGGAACATCTACGGGCCCTTCTGCGAGTGTGATGACTTCTCCTGCGCTCGATACAAGGGAGTCCTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011778-'19-14,'19-13,21-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(6.8=100)
A:
PF0036213=Integrin_beta=FE(10.3=100)
C2:
PF0036213=Integrin_beta=PD(9.6=28.5),PF079748=EGF_2=WD(100=25.0),PF079748=EGF_2=PU(32.3=6.9)
Main Skipping Isoform:
ENSGALT00000019224fB8530
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGACCACAGTGGAGATT
R:
CATAGGTCCCATTGCCGCTG
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]