BtaEX6006450 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84701300-84704026:+
Coord C1 exon
chrX:84701300-84701554
Coord A exon
chrX:84702332-84702449
Coord C2 exon
chrX:84702560-84704026
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTCATTTGCCTCCTCCACAGACA
3' ss Score
8.6
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATACGGTGTTCTCCCGAGTAGAGGAAGAGCACCTCTGGGAGTGTAAGCAGCTGGGGGTCTACTCGCCCTTTGTCCTTCTCAACACCCTCATGTTTTTCAACACTAAGTTTTTTGGGCTTCAGACAGCCGAGGAACACATGCAGCTCTCCTTCACCAATGTGGTCCGGCAGTCCCGCAAGTGTACCACCCCTCGGGGCACCACCAAGGTGGTGAGCATCCGCTACTATGCTCCTGTCCGCCAGAGGAAAGGGCGAG
Seq A exon
ACACAGGTCCTGGGAAACGGAAGAGAGATGATGAAGCCCCCATTTTAGAGCAGCGTGAGAACCGCATGAATCCCCTCCGCTGCCCTGTCAAGTTCTATGAATTCTATCTCTCAAAATG
Seq C2 exon
TCCTGAAAGCCTCCGGACGCGCAATGACGTGTTCTACCTGCAACCCGAGCGGTCCTGCATTGCTGAGTCACCTCTCTGGTATTCTGTGATCCCCATGGACCGCAGCATGTTGGAGAGCATGCTCAATCGCATTCTGGCTGTGCGTGAGATTTATGAGGAGCTGGGTCGTCCCGGGGAGGAAGACCTAGACTGAGCCCACATGCTTCCCGTATCCATCTTCCACGACGTCTGTCCCACGGCCACGTCCCACAGGGCGACAGGCCCAGGAACCGATGCTACTCATTCTGAAGGGCTCTGACTGCCCTTTTCTACTCATCCATTCCCTGCCTTCCCTAGGAATCCCTGGCTTTTACCTTCTCCCAAACCACTTGACGACCACAAGGCCTCAGTCCTCTGTACTGAGAGACTGGTCTCCCAGGGATGGGCAAAACCCAGCTAGGCCATTTTCTTCATGTTTCAGAGTAAACTCCTGGGGCCAAACTCTGAGTGAAGTGTTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492-'32-32,'32-31,33-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.450 C2=0.062
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(49.4=98.8)
A:
PF120123=DUF3504=FE(22.7=100)
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAACACATGCAGCTCTCC
R:
GAGCATGCTCTCCAACATGCT
Band lengths:
251-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]