HsaEX6052283 @ hg19
Exon Skipping
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70459474-70462274:-
Coord C1 exon
chrX:70462020-70462274
Coord A exon
chrX:70461077-70461194
Coord C2 exon
chrX:70459474-70460958
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATCATTTCCCTCCCCTATAGACA
3' ss Score
9.05
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATACGGTGTTCTCTCGAGTGGAGGAGGAGCACCTCTGGGAGTGTAAGCAACTGGGGGTCTACTCGCCCTTTGTCCTCCTCAACACCCTCATGTTCTTCAACACTAAGTTTTTTGGGCTGCAGACAGCTGAGGAACACATGCAACTCTCCTTCACCAATGTGGTGCGGCAGTCCCGCAAGTGTACCACCCCTCGGGGCACCACCAAGGTGGTGAGCATCCGCTACTATGCCCCAGTCCGCCAGAGGAAAGGGCGAG
Seq A exon
ACACGGGTCCTGGAAAACGGAAGAGAGAAGATGAAGCCCCTATCTTAGAGCAGCGTGAGAACCGCATGAATCCCCTCCGCTGCCCTGTCAAGTTCTATGAATTCTATCTCTCAAAATG
Seq C2 exon
TCCTGAAAGCCTCCGGACTCGCAACGATGTGTTCTACCTGCAACCTGAACGGTCCTGCATCGCCGAGTCACCTCTCTGGTATTCTGTGATCCCCATGGACCGCAGCATGTTGGAGAGCATGCTCAATCGCATCCTGGCTGTGCGCGAGATTTATGAGGAACTGGGTCGTCCTGGGGAGGAAGACCTGGACTGAGCTCGTGTGCCATCCATATCCATCTTTCACATCAATGTCTGTCCTGTGGCCATGTCCCTCAGGGTGACAGGCCCAGGAACCAATGCTACTCATTCTGAAGGGCCCTGACTGCTCCTTTCCGCTCACCCATTCCCTGCCTTCTCTAGGAACCCTGGCTTTTATCTTCTTCCGTACCACTTGACAACCATGGGGCCCTGGTCTTCTGTACTCAGGGGCTGGTCTCCCAGTGATGGGCAAAAGCCAGCTTGCCCGTTTTCTTTATGCTTCAGAGTAAACCCCTCCTTCTGGGTCCAGACTCTGGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-'35-34,'35-33,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.450 C2=0.063
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(49.4=98.8)
A:
PF120123=DUF3504=FE(22.7=100)
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTAAGCAACTGGGGGTCT
R:
AGAACACATCGTTGCGAGTCC
Band lengths:
251-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)