GgaEX7003545 @ galGal4
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2290187-2292421:+
Coord C1 exon
chr4:2290187-2290441
Coord A exon
chr4:2290534-2290651
Coord C2 exon
chr4:2291040-2292421
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCCCCCCCTTTGCAGATG
3' ss Score
12.82
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
ACACAGTCTTCTCACGTGTCGAGGAGGAGCACCTCTGGGAGTGCAAGCAGCTGGGCGTTTACTCACCCTTTGTGCTCCTCAACACCCTTATGTTCTTCAACACTAAGTTCTTTGGGCTGCAGACAGCGGAGGAGCACATGCAGCTCTCCTTCACCAACGTGGTACGGCAGTCCCGCAAGTGCACCACAGCCCGTGGTGTCACCAAGATGGTGAGCATCCGCTACTGCGCTCCTGCCAAGCAGAAGAAAGGCCGAG
Seq A exon
ATGGTAGCACTGGAAAGAGGAAGCGTGAGGAGGAGATGCCAATGTTGGAGCAGCGGGAGAACAAGATGAACCCGCTTCGATGCCCCGTCAAGTTCTATGAGTTTTATCTCTCTAAATG
Seq C2 exon
TCCTGAGAGCATGCGGAACCGCAGCGACATCTTCTACCTGCAGCCTGAGAGGTCGTGCATCGCCGAGTCCCCACTTTGGTATTCAGTCATCCCCATGGACAGGAGCATGCTGGAAAGCATGCTGAACCGTATCCTGGTGGTGAGGGAGATCTACGAGGAGCACAGCCGGCTCAGCAGCCTGGAGGATGATATGGACTAAGCACAAGGTGCTGCTGGGCTCGTTCTGCTCCAGCCTTGGACACCTCATCTCCATGACTCCTGTTTTGGGGGCCGTGCAGCACAGCGTGGGGCCGGGACTGCAGCAGTGCTGTCCCCACATTGTTAAAGACATCTCATCCTGCTCGTAACAGGCCTTTCCTACCTACGTGGCGCCTGCGCTCAGCCCTGTCCCAGTGCCAGGTGGGCCATCTTCCCTGGGGCCAACCCCTGCAGCACAGAGGTGGCAAAGCCACCAGGGTGGTGGCCCCTTTTCCTCCCCGTCCTCCCGCTCCCCAGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533-'38-44,'38-43,39-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.500 C2=0.076
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(49.4=98.8)
A:
PF120123=DUF3504=FE(22.7=100)
C2:
PF120123=DUF3504=PD(27.3=70.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGTTTACTCACCCTTTGT
R:
CAGGTAGAAGATGTCGCTGCG
Band lengths:
243-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]