DreEX0067094 @ danRer10
Exon Skipping
Gene
ENSDARG00000035821 | si:ch211-173p18.3
Description
si:ch211-173p18.3 [Source:ZFIN;Acc:ZDB-GENE-060503-672]
Coordinates
chr19:40575746-40578679:+
Coord C1 exon
chr19:40575746-40575985
Coord A exon
chr19:40576057-40576180
Coord C2 exon
chr19:40578058-40578679
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATCATTTTTCTTAATAACAGATG
3' ss Score
7.47
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTTATATTCACTCTCGTGTGGAAGAGGAGTTTCTGTGGAACTGTAAGCAGCTCGGGGCCTTTTCACCTGGCGTTCTGCTCAACACTTTAATCTATTTCTTCACAAAGTACTTTAACTACAGGACCGTGGAGCAGCACCGTCTCCTCTCTTTCGCACACGTCAAACGTTACACTCGGGGGCCGGCCAACGCTAAAGTGTCCTTCCTGCGTTTCTACCCACCAAAAGAGGACTCAAGCGACG
Seq A exon
ATGGTGTCCCTGCAAAGAAAAGAAAGAAGGACGATGAACGACAAAGGGTGCTTAAGATAGGGCAGAATTCAGACAATCCCCTCCATTGTCCCGTCAGGCTTTACGAGTTTTATCTCTCAAAATG
Seq C2 exon
CTCGCCTGGCATTAGGCATCACGCAACCAAGTTTTACCTGAGCCCCGAGCGCTCCTGTGTTCCCAGCAGCCCTACATGGTTCTCCATCAGCGCTCTGAGCGACGAGGCTCTGGACAGCATGTTATCCCGCATCCTCACAGTCCGAGAGCTTCATATGGAGACAGAGCAAACACCCGCTGACACTGATTCAGACAGCGACTCTGACTACAATCAGTTTTAAGACCACAAACCTGAGCTCGTCCTCTGAAGTAGTTCTGGAAAGCAAGCGGTTTGTTATTGTGTCCGTTGTTGTTCATTCTCAGTTATCTATTACTGGCTCTAGATACCTATATGTCTTGTTCCCCGACATCTTTCATTTTTTCAAAGTTTCTTCCGGATGTCCAGGATGCTTGAACTCCTCCAGCGGTGGACGCTGATCACTCATTAAACTCATTATTGTAAGTCACCACAATTTGTATTCTATCGATACACTAAAGACATTGGCAGCATCATTCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035821-'38-49,'38-48,40-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.476 C2=0.329
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(47.3=98.8)
A:
PF120123=DUF3504=FE(24.3=100)
C2:
PF120123=DUF3504=PD(27.8=63.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAACGCTAAAGTGTCCTT
R:
GTCTGAATCAGTGTCAGCGGG
Band lengths:
252-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]