RnoEX6026072 @ rn6
Exon Skipping
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71299920-71301879:-
Coord C1 exon
chrX:71301625-71301879
Coord A exon
chrX:71300266-71300380
Coord C2 exon
chrX:71299920-71300158
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTCATTTCTCCCCACTATAGACA
3' ss Score
7.37
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATACTGTATTCTCCCGTGTGGAGGAAGAACACCTCTGGGAGTGCAAGCAACTGGGGGTTTATTCTCCCTTTGTCCTTCTCAACACCCTCATGTTCTTCAACACTAAGTTTTTTGGACTGCAGACAGCTGAGGAACACATGCAGCTCTCTTTCACTAATGTGGTGCGACAGTCTCGCAAGTGTACCACGCCTCGGGGCACCACAAAGGTGGTGAGCATCCGCTACTATGCCCCAGTCCGACAGAGGAAAGGGCGAG
Seq A exon
ACACAGGTCCTGGGAAACGAAAGAGAGAAGATGAAACTATCTTAGAGCAGCGTGAGAATCGCATGAATCCCCTCCGCTGCCCCGTCAAGTTCTATGAGTTCTATCTCTCAAAATG
Seq C2 exon
TCCTGAAAGCCTCCGGACTCGAAACGACGTGTTCTATTTGCAACCCGAGCGCTCCTGCATTGCTGAGTCACCTCTCTGGTACTCTGTGATTCCCATGGACCGAAGCATGTTGGAGAGCATGCTCAATCGCATTCTGGCTGTGCGGGAGATTTATGAGGAACTTGGTCGTCCTGGGGAAGAAGACCTAGACTGAACCCACGTGGTACCTTGTATCCATCTATCACATCCGTGTCTGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707-'33-36,'33-35,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.436 C2=0.062
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(49.7=98.8)
A:
PF120123=DUF3504=FE(22.2=100)
C2:
PF120123=DUF3504=PD(27.5=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTGAGGAACACATGCAG
R:
CTCTCCAACATGCTTCGGTCC
Band lengths:
250-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]