DreEX6036004 @ danRer10
Exon Skipping
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21619442-21623038:-
Coord C1 exon
chr9:21622796-21623038
Coord A exon
chr9:21622529-21622664
Coord C2 exon
chr9:21619442-21620191
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTGTACGTGTTTTTCACAGAGC
3' ss Score
8.77
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTTCTCGGTGGAGTCGTGTTGAAGAGCAATATCTGTGGAGCAGCGGACAGCTTGGAGAACAGGCGCCTTCTGTCCTGCTGAGATCTGTATTCTATCTCAACACCAAATACTTTGGTCTTCGCACCCCAGAACAGCACTTACGCCTCTCATTTGCAAACGTCTATGGCCCAAGCAGCTCGAAACCGCACAGCCATGAGACCACCGTCTGTATACGCATCCCCTCCATCTCACAGGAGCAGCATG
Seq A exon
AGCAATCAGGAAGTAAGAGAAGACGTAAAGATTACTGTGACTCAAATTTTGATTCAGACAGCGGTTCAGGGGGATCCGCACACTGTCCTGTTAAGAAGCATGAGTGCCGACTGTATGAGCTTTACCTTTCGAAGTG
Seq C2 exon
CCCAGAGTCTGTGAGACAGAGGACAGATTTTTTTTACATGAAGCCAGAGGTGTCTGCGTCGTCGGATAGTCCGCTGTGGTTCAGCTCGACGCCTCTGGAGAAGAGTGTGCTGAGCAGGCTCCTGACTCGAGCGCTGCTGGTCAGAGAGGTCTATAAAGACAACCAGCCTGAAGAGGACGCAGCCTAGAGGCCGATGCACTGAAGACTTCTAACTATGCTATCATGACACCCTGTGCATCACCAAACCAGCTGCTTTCCACACCACACCCTGTCACGCTCCCTTTAAACACACTGATCCCAGTACAGTTATGACATGAGTCCAGTCAGGATGGACATCGATGGGATTATGCTGATTCTGGTCAGTCTTCCCAAAGACCTTGATTCAGACGAGTAGATTTTTTTTCCCCCACCATGAACGTGACTTACAGTATGCTGCTTTCTTCTTTATTTTCCCCCCCTCTCTTCCCTATTTGTTGGAAACTTTTGTTGATGTAGCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353-'32-32,'32-28,33-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.391 C2=0.097
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(46.6=98.8)
A:
PF120123=DUF3504=FE(25.9=100)
C2:
PF120123=DUF3504=PD(27.0=74.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGTCTATGGCCCAAGCAG
R:
TAGACCTCTCTGACCAGCAGC
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]