GgaEX6006366 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:183330409-183334193:-
Coord C1 exon
chr1:183333939-183334193
Coord A exon
chr1:183333436-183333556
Coord C2 exon
chr1:183330409-183330607
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTTGGTTTTCTTCTTAAAGATA
3' ss Score
7.06
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
AAGGATCAATATTCTCTCGAGTGGAAGAGGATTATCTATGGAGGATTAAACAGCTAGGATCACATTCGCCAGTTGCTCTTCTGAATACTCTGTTCTACTTTAACACCAAGTATTTTGGTCTGAAAACAGTGGAGCAGCACTTAAGACTTTCTTTTGGCACTGTTTTCAGACAGTGGAAAAAAAATCCTCTAACAATGGAAAGCAAAGCTTGTCTTCGATATCAGGTGTCTTCCCTGTGCAGAGCTGATAGTGAAG
Seq A exon
ATAAAATTACTACTGGGAAAAGGAAACATGAAGATGATGAACCAGTATTTGAACAGATTGAAAACACGTCTGATCCAACTAGATGCCCTGTGAAACTGTTTGAGTGCTATCTGTCTAAAAG
Seq C2 exon
TTGTAGCCCACAGAATCTGAATCAGAGGACGGACATGTTCTATTTGCAGCCAGAATGCTCTGTCTCCTCAGATAGTTCTGTCTGGTACACTTCCACCTCACTGGACCGCAACACTTTGGAAAATATGCTCGTACGGGTTCTTTTAGTAAAAGATATTTATGAAAAAGACAATTATGAACTGGATGAAGACATAGATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'31-42,'31-41,33-42=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.390 C2=0.030
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.3=97.7)
A:
PF120123=DUF3504=FE(23.0=100)
C2:
PF120123=DUF3504=PD(28.2=73.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACAGTGGAGCAGCACT
R:
TTTCCAAAGTGTTGCGGTCCA
Band lengths:
257-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]