MmuEX0053919 @ mm10
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56956852-56962579:+
Coord C1 exon
chr14:56956852-56957103
Coord A exon
chr14:56958182-56958302
Coord C2 exon
chr14:56959715-56962579
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTGTTGTTGTTAAAGATA
3' ss Score
5.33
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGTCAATTTTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCCCACTCTCCAGTAGCACTTTTGAATACCCTATTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACAATGGAAAATAAAGCATGTCTTCGCTATCAGGTGTCTTCCTTATGTGGAACAGACAATGAAG
Seq A exon
ATAAAATTGCTACTGGAAAACGAAAACATGAAGATGATGAGCCAGTATTTGAACAAGTTGAAAACACAGCCAACCCTTCTAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
Seq C2 exon
TCCACAGAACCTTAATCAGAGAATGGATGTTTTTTATTTACAACCAGAATGTTCTAGTTCTACAGATAGCCCTGTCTGGTACACATCTACTTCCCTGGACCGGAACACCTTGGAAAATATGCTTGTACGGGTTCTTCTAGTAAAAGATATTTATGATAAAGACAATTATGAACTGGATGAAGACACAGACTAAAAAGGACCATTTCAGAAGCAATGGGATAACACAGCATTAGATAGTCATGCTGCTAGATCTTTACAGGAAAACATTTTAAGTTTACTCCTTCTGTTCTGAGTTTTGTAGCAATGTACCCACACTGGGTATTACCATGTAAATAATCTGTGTGTGAAAGTTGCCATTATTCTATGTAGTGGTTTTAGGATACTTAACAAATACATCAAATTCTTTTTTATTATTATTTATTTGATTAGGTATGTTTGTAACTTTTTACATTACAAATAAGAAGAGAATGTGCCATGTATAAGTTTTTCTTGTTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-'46-41,'46-40,48-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.508 C2=0.109
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.8=98.8)
A:
PF120123=DUF3504=FE(23.3=100)
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGAAAACAGTGGAACA
R:
CCGGTCCAGGGAAGTAGATGT
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types