BtaEX6056660 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36391824-36393550:-
Coord C1 exon
chr12:36393300-36393550
Coord A exon
chr12:36392891-36393012
Coord C2 exon
chr12:36391824-36392016
Length
122 bp
Sequences
Splice sites
3' ss Seq
ATGTGATTTTTATTTCTTAAGAT
3' ss Score
0.99
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGTCAATATTTTCTCGAGTTGAAGAAGATTATCTGTGGAGGATAAAACAGCTAGGATCACACTCTCCAGTAGCTCTTCTGAACACCCTGTTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAGCACTTACGGCTTTCCTTTGGCACTGTGTTTAGGCACTGGAAAAAAAACCCTTTAACCATGGAAAATAAAGCCTGTCTTCGGTACCAAGTGTCTTCCTTGTGCGGAACAGATAGTGAA
Seq A exon
GATAAAATTACTACTGGAAAAAGAAAACATGAAGATGATGAGCCAGTATTTGAACAAATTGAAAATACAGCCAATCCTTCTAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAGAG
Seq C2 exon
TCCACAGAATCTTAATCAGAGAATGGATGTTTTTTATTTGCAACCAGAATGCTCTAGCTCTGCAGACAGCCCTGTCTGGTACACGTCCGCCTCACTGGACCGAAACACCTTGGAAAACATGCTCGTACGGGTTCTTTTAGTAAAAGATATTTATGATAAAGACAATTACGAACTGGATGAAGACACAGACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-'46-45,'46-44,47-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.488 C2=0.109
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.3=98.8)
A:
PF120123=DUF3504=FE(23.3=100)
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAACAGCACTTACGGCTT
R:
ACCCGTACGAGCATGTTTTCC
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]