HsaEX6039443 @ hg19
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20656921-20660939:+
Coord C1 exon
chr13:20656921-20657172
Coord A exon
chr13:20657796-20657916
Coord C2 exon
chr13:20659962-20660939
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTCACTTTTATTTTTTAAGATA
3' ss Score
8.53
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTCAATATTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCACACTCTCCAGTAGCTCTTCTGAATACACTGTTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACGATGGAAAACAAAGCGTGTCTTCGATACCAAGTGTCTTCCTTGTGTGGAACAGATAATGAAG
Seq A exon
ATAAAATTACTACTGGAAAAAGAAAACATGAAGATGATGAGCCAGTATTTGAACAAATTGAAAACACAGCCAATCCTTCCAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
Seq C2 exon
TCCACAGAATCTTAATCAGAGGATGGATGTTTTTTATTTGCAACCAGAATGCTCTAGTTCTACAGATAGCCCTGTCTGGTATACGTCTACTTCACTGGACCGAAACACCTTGGAAAATATGCTTGTACGGGTTCTTCTAGTAAAAGATATTTATGATAAAGACAATTATGAACTGGATGAAGACACAGACTAAAAAGGAACGTTGCAGAAGCAATCGGGATAAAACAGCATTAGATAGTCATGCTGCTAGATCTTTATTATGGAAAACATTTCAAGTTTACTCCTTCTGTTTTGAGTTTTGTAGCAGTGTACCCACGCTGGGTATTACCATGTAAATAATCTGTGAGTGAAAGTTGCCATTATTCTATGTAGTGGTTTTAGGATACTTAACAAATACATTCAAATTCTTTTTTTATTATTATTTATTTGATTAGGTATGTTTGTAACTTTTTACATTACAGAATATGAATGAGAATGTGCCATGTATAATTTTTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-'41-46,'41-45,43-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.488 C2=0.109
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.8=98.8)
A:
PF120123=DUF3504=FE(23.3=100)
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGAAAACAGTGGAACA
R:
CCAAGGTGTTTCGGTCCAGTG
Band lengths:
253-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)