Special

MmuEX0053919 @ mm9

Exon Skipping

Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57575689-57579182:+
Coord C1 exon
chr14:57575689-57575940
Coord A exon
chr14:57577019-57577139
Coord C2 exon
chr14:57578552-57579182
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTGTTGTTGTTAAAGATA
3' ss Score
5.33
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGTCAATTTTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCCCACTCTCCAGTAGCACTTTTGAATACCCTATTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACAATGGAAAATAAAGCATGTCTTCGCTATCAGGTGTCTTCCTTATGTGGAACAGACAATGAAG
Seq A exon
ATAAAATTGCTACTGGAAAACGAAAACATGAAGATGATGAGCCAGTATTTGAACAAGTTGAAAACACAGCCAACCCTTCTAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
Seq C2 exon
TCCACAGAACCTTAATCAGAGAATGGATGTTTTTTATTTACAACCAGAATGTTCTAGTTCTACAGATAGCCCTGTCTGGTACACATCTACTTCCCTGGACCGGAACACCTTGGAAAATATGCTTGTACGGGTTCTTCTAGTAAAAGATATTTATGATAAAGACAATTATGAACTGGATGAAGACACAGACTAAAAAGGACCATTTCAGAAGCAATGGGATAACACAGCATTAGATAGTCATGCTGCTAGATCTTTACAGGAAAACATTTTAAGTTTACTCCTTCTGTTCTGAGTTTTGTAGCAATGTACCCACACTGGGTATTACCATGTAAATAATCTGTGTGTGAAAGTTGCCATTATTCTATGTAGTGGTTTTAGGATACTTAACAAATACATCAAATTCTTTTTTATTATTATTTATTTGATTAGGTATGTTTGTAACTTTTTACATTACAAATAAGAAGAGAATGTGCCATGTATAAGTTTTTCTTGTTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-'30-33,'30-32,31-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.506 C2=0.109
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF120123=DUF3504=PU(48.8=98.8)

							
A:
PF120123=DUF3504=FE(23.3=100)

							
C2:
PF120123=DUF3504=PD(27.3=72.3)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000022511f1127A





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000022511, ENSMUSP00000022511f5690A
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr13:20083656-20083776 
HIGH PSI
HsaEX6039443
(ZMYM2)
Human
(hg19)
chr13:20657796-20657916 
HIGH PSI
HsaEX6039443
(ZMYM2)
Rat
(rn6)
chr15:37225661-37225781 
HIGH PSI
RnoEX6051916
(Zmym2)
Cow
(bosTau6)
chr12:36392891-36393012 
HIGH PSI
BtaEX6056660
(ZMYM2)
Chicken
(galGal4)
chr1:178277321-178277441 
HIGH PSI
GgaEX6006366
([1])
Chicken
(galGal3)
chr1:183333436-183333556 
HIGH PSI
GgaEX6006366
([2])
Zebrafish
(danRer10)
chr9:21622529-21622664 
HIGH PSI
DreEX6036004
(zmym2)
Fruitfly
(dm6)
chr3R:27257544-27257643 
HIGH PSI
DmeEX6023674
(woc)




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGGCCTGAAAACAGTGGAACA

				
R: 
CCGGTCCAGGGAAGTAGATGT

				
Band lengths: 
243-364

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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