GgaEX6006366 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178272655-178278075:-
Coord C1 exon
chr1:178277824-178278075
Coord A exon
chr1:178277321-178277441
Coord C2 exon
chr1:178272655-178274486
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTTGGTTTTCTTCTTAAAGATA
3' ss Score
7.06
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GATCAATATTCTCTCGAGTGGAAGAGGATTATCTATGGAGGATTAAACAGCTAGGATCACATTCGCCAGTTGCTCTTCTGAATACTCTGTTCTACTTTAACACCAAGTATTTTGGTCTGAAAACAGTGGAGCAGCACTTAAGACTTTCTTTTGGCACTGTTTTCAGACAGTGGAAAAAAAATCCTCTAACAATGGAAAGCAAAGCTTGTCTTCGATATCAGGTGTCTTCCCTGTGCAGAGCTGATAGTGAAG
Seq A exon
ATAAAATTACTACTGGGAAAAGGAAACATGAAGATGATGAACCAGTATTTGAACAGATTGAAAACACGTCTGATCCAACTAGATGCCCTGTGAAACTGTTTGAGTGCTATCTGTCTAAAAG
Seq C2 exon
CCCACAGAATCTGAATCAGAGGACGGACATGTTCTATTTGCAGCCAGAATGCTCTGTCTCCTCAGATAGTTCTGTCTGGTACACTTCCACCTCACTGGACCGCAACACTTTGGAAAATATGCTCGTACGGGTTCTTTTAGTAAAAGATATTTATGAAAAAGACAATTATGAACTGGATGAAGACATAGATTAAAACAAACTTCCAAAAACAGTCAAGAAAACAAACAGCATTAGATATAGTCACGCTGCTAGACTTTTATTATGGAGAACATTTCAAGTTTACCCTTTGTTTTATGAGTTTTGTAGCATTGTGTACCCTCACCCGGGTATTAACATGTAAATAGTCTGTGAGTGAAAGTTTCCATTATTCTGCGTAGTGATGCTAGGATACATAACAAACACATTTCAGATTCTTTTTTTTTATTATTATTTATTTGACTAGATATGTTTGTAACTTTTTACATTGCAAAATATGAATGAGAATGTGCCATGTGTAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'56-57,'56-54,59-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.463 C2=0.031
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.8=98.8)
A:
PF120123=DUF3504=FE(23.3=100)
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACAGTGGAGCAGCACT
R:
TTTCCAAAGTGTTGCGGTCCA
Band lengths:
251-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]