RnoEX6051916 @ rn6
Exon Skipping
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37224235-37227301:+
Coord C1 exon
chr15:37224235-37224486
Coord A exon
chr15:37225661-37225781
Coord C2 exon
chr15:37227109-37227301
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTGTTGTTGTTGAAGATA
3' ss Score
5.12
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTCAATATTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCCCACTCTCCAGTAGCACTTTTGAACACCCTATTCTACTTTAACACTAAATATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACAATGGAAAATAAAGCGTGTCTTCGCTATCAGGTGTCTTCCTTGTGTGGAACAGACAATGAAG
Seq A exon
ATAAAATTGCTACTGGGAAGCGGAAGCATGAAGATGATGAGCCGGTATTTGAGCAAGTTGAGAACACAGCCAACCCTTCCAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
Seq C2 exon
TCCACAGAATCTTAATCAGAGAATGGATGTATTTTATTTGCAACCAGAATGTTCTAGTTCTACAGATAGCCCTGTCTGGTACACATCTGCTTCCCTGGACCGGAACACCTTGGAAAATATGCTTGTACGGGTTCTTCTAGTAAAAGATATTTATGATAAAGACAATTATGAACTGGATGAAGACACAGACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734-'43-52,'43-51,45-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.512 C2=0.109
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.8=98.8)
A:
PF120123=DUF3504=FE(23.3=100)
C2:
PF120123=DUF3504=PD(27.3=72.3)
Main Skipping Isoform:
ENSRNOT00000011684fB17068
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGAAAACAGTGGAACA
R:
TTTTCCAAGGTGTTCCGGTCC
Band lengths:
257-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]