MmuEX6045446 @ mm10
Exon Skipping
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101404384-101407459:-
Coord C1 exon
chrX:101407205-101407459
Coord A exon
chrX:101405905-101406019
Coord C2 exon
chrX:101404384-101405803
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTCATTTCTCCCCGCTATAGACA
3' ss Score
6.98
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATACTGTATTCTCCCGTGTGGAGGAAGAACACCTCTGGGAGTGCAAGCAACTGGGGGTTTATTCTCCCTTTGTCCTCCTCAATACCCTCATGTTCTTCAACACTAAGTTTTTTGGACTGCAGACAGCTGAGGAACACATGCAACTCTCTTTCACTAATGTGGTACGGCAGTCTCGCAAGTGTACCACGCCTCGGGGCACCACCAAGGTGGTGAGCATCCGCTACTATGCCCCAGTCCGACAGAGGAAAGGGCGAG
Seq A exon
ACACAGGTCCTGGGAAACGAAAGAGAGAAGATGAAACTATCTTAGAGCAGCGTGAGAATCGCATGAATCCCCTCCGCTGCCCCGTCAAGTTCTATGAGTTCTATCTCTCAAAATG
Seq C2 exon
TCCTGAAAGCCTCCGAACTCGAAATGATGTGTTCTATCTGCAACCTGAGCGCTCCTGCATTGCCGAATCACCTCTCTGGTATTCTGTGATTCCCATGGACCGAAGCATGTTGGAGAGCATGCTCAATCGCATTTTAGCTGTGCGTGAGATTTATGAGGAACTTGGTCGTCCTGGGGAAGAAGACCTAGACTGAGCCCATGTTGTACCTTGTACCCATCTATCACATCAGTGTCTGTCCTGGAACCAATGCTATCCATTCTGAAGGGCCCTAACTGGCTCCTTCTATTCTCTCCTTCCCTGCCTTTCCCAGGAACCCCTGCCTTTAACCTTCTTTCATACCACTTGATAATCATGGGCCCCCAGTGTACTCAGGGGCTAGTCCCCCAGTGATGGGTGTGAACCTGGTAGCCCATTTTGTTTATGGAAACCCTTTCTGCTGGGGCCTGACTCTGATGGAGTGATGATAGCTCTGGTGATCCTGTTGGCTTTGCGTTTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-'51-55,'51-53,53-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.436 C2=0.066
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(49.7=98.8)
A:
PF120123=DUF3504=FE(22.2=100)
C2:
PF120123=DUF3504=PD(27.5=72.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTGAGGAACACATGCA
R:
CTCTCCAACATGCTTCGGTCC
Band lengths:
251-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types