MmuEX6096148 @ mm10
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126861939-126868965:-
Coord C1 exon
chr4:126868717-126868965
Coord A exon
chr4:126865497-126865626
Coord C2 exon
chr4:126861939-126864317
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCCTACCTCAAGATA
3' ss Score
7.43
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GTTACATGTTCTCCCGCATTGAAGAAGAGCATCTGTGGGAGTGCAAACAGCTGGGCGCTTACTCGCCCATTGTCCTGTTAAACACCCTCCTTTTTTTCAATACCAAATACTTCCAACTAAGGAATGTTACTGAGCACTTGAAGCTGTCCTTTGCCCACGTGATGCGCCGGACCAGGACTCTGAAGTACAGCACCAAGATGACGTACCTGAGGTTCTTCCCGCCTTTACAGAAGCCGGAGTCAGAGCCAG
Seq A exon
ATAAGGTAACTATTGGCAAGAGGAAACGAAATGAAGACGACGAGGCCCCAGTGGGAGTGGAGATGGCAGAGAACACTGACAACCCGCTGAGGTGCCCGGTTCGGCTTTATGAGTTTTACCTGTCAAAATG
Seq C2 exon
TTCTGAAAGTGTGAAGCAGAGGAGTGATGTGTTCTACCTTCAGCCGGAGCGCTCCTGTGTTCCTAACAGTCCCATGTGGTACTCCACATTCCCCATAGACCCTGGAACCCTGGACACCATGTTGACGCGCATTCTCATGGTGAGGGAGGTACATGAAGAACTTGCCAAAGCCAAATCTGAAGACTCTGATGCTGAATTATCAGATTAACATGAAGGAAAGCTCCCGTTTTCATGCACACTGGTATGCACCAAGCTGTGATGCACTCAGCTGTTGGAAAGATGTTGAAATGCAAGTCCTCTTGACTTGCTTGTTTGGTGGGAAAAACGGTGGCTCTGAGCCGTAGTGGACTGCAAATGTAACCTGAGGGGAGAAGGGTGAGTGGATTGGGAGGGAGAGGAGTGGTCATAGACATCTTCGAAAGACTAACCAGTTTCTGAGTGGTGCATAATCTTATTTTCTTTGGGAATAAGAAATTGTGGAATATTTTTAAGGAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-'63-61,'63-58,67-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.534 C2=0.203
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(47.7=98.8)
A:
PF120123=DUF3504=FE(24.7=100)
C2:
PF120123=DUF3504=PD(27.0=67.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGCACTTGAAGCTGTCC
R:
CAACATGGTGTCCAGGGTTCC
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types