DreEX0087961 @ danRer10
Exon Skipping
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40523396-40526488:+
Coord C1 exon
chr19:40523396-40523629
Coord A exon
chr19:40523710-40523839
Coord C2 exon
chr19:40526179-40526488
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTGATGAATTTAGACG
3' ss Score
4.47
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTTATATTCACTCTCGTGTGGAAGAGGAGTATCTGTGGGACTGTAAGCAGCTCGGGGCCTTTTCACCTGGAGTTCTGCTCAACACTTTAATCTATTTCTTCACAAAATACTTTAACTACAGGACAGCGGAGCAGCACCGTCTCCTCTCTTTCGGCCACATCGTGCGCTGCTCTCGGAGCAAAGGCAACACAAAAGTGGCCTGTTTGCGTTTCTATCCTCCGAAAGATGAAGCCG
Seq A exon
ACGGCGTTCCGGCAAAGAGGAGGAAAGAAGAGGGAGAGGAGGAGGATGAAACTGTATATGAGATAAAGGAGAATTCAGACAATCCTCTCCGCTGTCCTGTCAGGCTCTATGAGTTCTATCTCTCAAAATG
Seq C2 exon
CTCACCGAGTGTGAGACAGCGCACGACTGATTTCTACCTGAGCCCCGAGCGCTCCTGCGTGCCCAACAGCCCCATGTGGTTCTCCATCAGCGCTCTGAGCGATGAGGCTTTAAACAGCATGTTAACCCGCATCCTCACAGTCAGAGAGCTCCATCTGGACACAGAAAAAACACCCGCTGACAACGAATCAGACAGCGACTCCGACTTCAGTCCGTGATGCTGAAAACGGTCTTGGAGAAAAGGTTTCTCTTTGGTTCTTCACTGACAAAACCTAGACACACCAGTGAACTGGCTTTTTGGAGATCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823-'31-40,'31-39,32-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.292
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(46.2=98.7)
A:
PF120123=DUF3504=FE(25.4=100)
C2:
PF120123=DUF3504=PD(27.8=64.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCTCTTTCGGCCACAT
R:
TGGAGCTCTCTGACTGTGAGG
Band lengths:
248-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]