RnoEX6023380 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144878212-144884615:-
Coord C1 exon
chr5:144884364-144884615
Coord A exon
chr5:144881531-144881660
Coord C2 exon
chr5:144878212-144880697
Length
130 bp
Sequences
Splice sites
3' ss Seq
GATTTTTTTCCTGTCTCAAGATA
3' ss Score
6.43
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GTTACATGTTCTCCCGCATCGAAGAAGAGCACCTGTGGGAGTGTAAGCAGCTGGGTGCCTACTCGCCCATTGTCCTGTTGAACACCCTCCTGTTTTTCAATACCAAATACTTCCAACTGAAGAATGTCACCGAGCACTTGAAGCTCTCCTTTGCCCACGTGATGAGGCGGACCAGGACTCTGAAGTACAGTACCAAGATGACGTACCTGAGGTTCTTCCCGCCGCCGCCACAGAAGCAAGAGTCGGAGCCAG
Seq A exon
ATAAACTAACTATTGGCAAGAGGAAACGAAATGAAGATGAGGAGGCTCCAGTGGGTGTGGAGATGGCAGAGAACACGGACAATCCACTGAGGTGCCCTGTCCGGCTTTACGAGTTTTACCTGTCTAAATG
Seq C2 exon
CTCTGAGAGTGTGAAGCAGAGGACCGACGTGTTCTACCTTCAGCCCGAGCGCTCGTGCGTTCCTAACAGTCCCATGTGGTACTCCACGTTCCCCATAGACCCTGGGACCCTGGACACCATGTTGACGCGCATTCTCATGGTGAGGGAGGTACATGAAGAACTTGCCAAAGCCAAGTCTGAAGACTCTGACGTGGAATTATCAGATTAAGATGGAGGGAAGCTTCCTGCTTTCATGCACACTGGTAGGCACCAAGCTGTGAATGCACTCAGCTGGTGGAAAGATGTTGAAATCCAAGTTCTCTTGACTTGCTTATTTGGTGGGAAAACAGACGGCTTCTGAGCCGTGGTGTTGCTGCAAATGAAACCTGAGGGGAGAAGTGTGGGTGAATTGGCAGGGAGAGTTCACAGACATCATGAAAGACTAACCAGTTTCTGAGTGGTGCATAGTCTTATTTTCTTTGGGAATAAGAAATTATGGAATATTTTTAAGGAAAACTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-'52-54,'52-52,54-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.545 C2=0.217
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.0=98.8)
A:
PF120123=DUF3504=FE(24.6=100)
C2:
PF120123=DUF3504=PD(26.9=67.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTTGAACACCCTCCTGT
R:
GGACTGTTAGGAACGCACGAG
Band lengths:
252-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]