GgaEX1000548 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4669465-4671805:-
Coord C1 exon
chr23:4671557-4671805
Coord A exon
chr23:4671104-4671233
Coord C2 exon
chr23:4669465-4669949
Length
130 bp
Sequences
Splice sites
3' ss Seq
TACCATTTTTGTGTGTCCAGATA
3' ss Score
7.38
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTTATATGTTCTCAAGAATAGAAGAGGAACACTTGTGGGAATGTAAACAGCTGGGTGCATATTCCCCCATAGTTTTACTGAACACACTGCTATTCTTCAACACCAAATACTTTCAACTAAAGAATGTCAGTGAGCACCTGAAGCTGTCCTTTGCCCACGTCATGAGACGGACCCGGACTCTGAAGTATAATACTAAGACAACATATTTACGTTTTTTCCCACCCTTTCAAAAACAAGAGGTAGAATCAG
Seq A exon
ATAAACTGTCTGTAGGCAAAAGGAAACGCGGTGAAGATGAGGAGATTTCAACAGCAGTGGAAATGGCTGAAAATGCAGATAATCCCCTGAGATGTCCAGTGCGACTTTATGAATTTTACTTGTCAAAGTG
Seq C2 exon
TTCTGAAAGCGTGAAGCAGAGAAGTGATGTATTTTACCTTCAGCCTGAGCGCTCCTGTGTACCTAATAGCCCCATGTGGTATTCCACATTGCCAATAGACCCGGGAACTTTGGACATCATGTTAACTCGCATTCTTATGGTGAGGGAGGTACACGAAGAACTTGCCAAAGTCAAATCAGAAGACTCTGATATTGAGTTATCAGACTAACTGAAGTGGGATGTTTTCCTTTGAATACATCAGAAGCACCAAACTGTGAATACGTCCAGCTTTTGGAAAAATGTGTATTACATAAGCCAAGATCATGTCACCTACAGGCATATTTGGAACCACAGCGGATGTACAAACTGGAACTGGAAGGAGACAAGCTCCATAAGCTGCAAGAAACAACGTCCTGTGGCAGGCAGCGATAAATCCTCTGAACAAATTCAAGTTGAACTAACCTGTTTGAGTGGTGCATAAATCCTTTATCTGTGTAGGGTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'36-39,'36-38,37-39=AN
Average complexity
A_S
Mappability confidence:
80%=75=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.295 C2=0.101
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(47.7=98.8)
A:
PF120123=DUF3504=FE(24.7=100)
C2:
PF120123=DUF3504=PD(27.0=67.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGAGCACCTGAAGCTG
R:
GATGTCCAAAGTTCCCGGGTC
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]