DreEX6053330 @ danRer10
Exon Skipping
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14723371-14726913:-
Coord C1 exon
chr17:14726665-14726913
Coord A exon
chr17:14726440-14726563
Coord C2 exon
chr17:14723371-14723898
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTTTGAACATGAAGCAC
3' ss Score
2.63
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GATACATGCACTCGCGGGTGGAGGAGGAATACCTCTGGGAGTGTAAGCAGTTGGGAGCTCTGTCTCCTATTGTTCTGCTTAACACGCTGCTGTTTTTCGGATCCAAACTGCTCAACCTGAAAACGGTTGAAGAGCATCGACGGCTCGCCTTTTCCAATGTCTCCCACTGCTCCAAGACCACCAAAAGTGGCTTGACCTCTTACCTTCGCTTTAGGCTACCTAACAAAGAGGAGGAAAAAGAGAAGAAAT
Seq A exon
CACCAGCTGGGAAGAGGAAGAGAGATGAAGAGAGCGTGGAGGAGGAGTTTTTGGAGATGCCGGAGAATGTGGAAAATCCTTTACGCTGCCCTGTCAGACTCTATGAGTTCTATCTCTCCAAATG
Seq C2 exon
CTCAAACTCTGTAAAACAGCGTCCAGATCTTTTCTACCTGCAGCCTGAAGCATCCTGCCATCCCAGCAGCCCTGTGTGGTACTCAGCCCAGCCACTGGACAGCACCATGATGGAAAGCATGCTAACACGTATCCTAGCTATACAGGACATTCACCTGGACTCGAAACATCAGCAAAAATACCTGGACTCGTCAGACGAAGAGAGCTCTTAATGTGAATCTATAAACTAGACATTCAATGACATCTACTTATTATTTTTATTCAGACCGGGAATGGGATGCAAACAGAAGCGTATGAAATTGTGCACAAGCTCAACAGACATTCCTTAAGCCCATCTATCCTATCATGAATGTTACAGACAGTTCAAATGAACATTTTTGGAGGGAATCGTTTGGTTTTTAGTCACAGTAGACATTGTTTCTCAGTATTTAGTATTATTTAGTGAACGCATTTTAAGTTGAAACATTCATCATGTCATTGTTGGTAACCTTTCAAAAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-'29-42,'29-41,30-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.452 C2=0.214
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.3=98.8)
A:
PF120123=DUF3504=FE(23.8=100)
C2:
PF120123=DUF3504=PD(27.3=66.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGGGAGCTCTGTCTCCT
R:
GATGCTTCAGGCTGCAGGTAG
Band lengths:
256-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]