BtaEX6019012 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110912671-110924933:-
Coord C1 exon
chr3:110924685-110924933
Coord A exon
chr3:110913993-110914122
Coord C2 exon
chr3:110912671-110913151
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTATAATTTTCTGTCTCAAGATA
3' ss Score
6.31
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTACATGTTCTCTCGCATTGAAGAAGAGCATTTGTGGGAGTGCAAACAGCTGGGCGCTTACTCACCAATCGTCCTCTTGAACACCCTCCTTTTCTTCAATACCAAATACTTTCAACTACGGAATGTTACTGAGCACTTGCAGCTTTCTTTTGCCCATGTGATGAGGCGGACGAGGACGCTGAAGTACAGCACCAAGATGACATATCTGAGGTTCTTCCCACCTTCACAGAAACAAGAGTCGGAACCAG
Seq A exon
ATAAACTAACCATTGGCAAGAGGAAACGAAATGAAGATGATGATGTTCCAGTGGGTGTGGAGATGGCAGAGAATACTGATAACCCCCTCAGATGCCCAGTCCGACTTTATGAGTTTTATCTGTCCAAATG
Seq C2 exon
CTCTGAAAGTGTGAAGCAGAGGAATGATGTGTTTTACCTTCAGCCTGAGCGCTCCTGTGTTCCAAATAGCCCCATGTGGTACTCCACATTTCCCATAGACCCTGGGACCTTGGACACCATGTTAACACGTATTCTCATGGTGAGGGAGGTACACGAAGAACTTGCCAAAGCCAAATCAGAAGACTCTGATGTTGAGTTATCAGATTAAAGTGGAAGTAGGGTTCCTATTTTCATACGTGTTGGTATGCACCAAATTGTGAATGCATCCAGCTTTGGAAAATGATAAGTCCCAAGTCCTCTTGACTTGATTATGAGGTAATGGAGAACAGACAGCTCGTGAACCAGTGTGGATGTACAAATGGCAACTGAAGGAAAGAATGTGAGCTGAGAAACCTTGTTCTCCAGCAGTGATATTGCTCTTAGACATCTTCAGAATGACTAACCAATTTCTCTGAGTGGTGCATAATCTTATTTTGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'34-39,'34-37,35-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.477 C2=0.188
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(47.7=98.8)
A:
PF120123=DUF3504=FE(24.7=100)
C2:
PF120123=DUF3504=PD(27.0=67.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCGCTTACTCACCAATC
R:
GCGCTCAGGCTGAAGGTAAAA
Band lengths:
251-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]