HsaEX0072909 @ hg19
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35881067-35887545:+
Coord C1 exon
chr1:35881067-35881315
Coord A exon
chr1:35884044-35884173
Coord C2 exon
chr1:35885071-35887545
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTATTATTTCCTGTCTCAAGATA
3' ss Score
6.87
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
GTTACATGTTCTCTCGCATTGAGGAAGAGCATTTGTGGGAGTGCAAACAGCTGGGCGCTTACTCACCAATCGTCCTTTTAAACACCCTCCTTTTCTTCAATACCAAATACTTCCAACTAAAGAATGTTACTGAGCACTTGAAGCTTTCCTTTGCCCATGTGATGAGACGGACCAGGACTCTGAAGTACAGTACCAAGATGACATATCTGAGGTTCTTCCCACCTTTACAGAAGCAGGAGTCAGAACCAG
Seq A exon
ATAAACTGACTGTTGGCAAGAGGAAACGAAATGAAGATGATGAGGTTCCAGTGGGGGTGGAGATGGCAGAGAATACTGACAATCCACTAAGATGCCCAGTCCGACTTTATGAGTTTTACCTGTCAAAATG
Seq C2 exon
TTCTGAAAGTGTGAAGCAAAGGAATGATGTGTTTTACCTTCAACCTGAGCGCTCCTGTGTCCCGAATAGCCCCATGTGGTACTCCACATTCCCGATAGACCCTGGAACCCTGGACACCATGTTAACACGTATTCTCATGGTGAGGGAGGTACATGAAGAACTTGCCAAAGCCAAATCTGAAGACTCTGATGTTGAATTATCAGATTAAAACGGAAGTGAGGTTCTTATTTTCATACATATTGGTATGCACCAAACTGTGAATGCATCCAGCTGTTGGAAAATGATGTATAAGTCTAAGTCCTCTTGACTTGACCATAAGATCATGGAAAACAGATGACTTGTGAACCCCACAGTGTGGATGTGCAAATGAAAATTGAAGGAAAGAATATGAACTGAGAAATGTTCTTTGGCAGTGATATAGTTCTTAGACATCTTCAGAATGACTAATTTCTCCGAGTGGTGCATAATCTTATTTTGTTTGGGAGTAACAAATCGTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.485 C2=0.188
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(47.7=98.8)
A:
PF120123=DUF3504=FE(24.7=100)
C2:
PF120123=DUF3504=PD(27.0=67.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCGCTTACTCACCAATC
R:
GAGCGCTCAGGTTGAAGGTAA
Band lengths:
253-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)