GgaEX1047565 @ galGal4
Exon Skipping
Gene
ENSGALG00000006867 | QRICH1
Description
glutamine-rich 1 [Source:HGNC Symbol;Acc:HGNC:24713]
Coordinates
chr12:11606656-11614488:+
Coord C1 exon
chr12:11606656-11606807
Coord A exon
chr12:11607476-11607566
Coord C2 exon
chr12:11608848-11614488
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTGTGGGGGTTGGTTTCTAGTTA
3' ss Score
4.14
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
ATACTTCCTGTTGAAGACAGTAGACCAGCACATGAAGCTGGCCTTCTCCAAGGTATTGAGGCAGACCAAGAAGAACCCTTCCAATCCCAAGGATAAAAGCACGAGTATCCGCTATCTGAAGGCTCATGGTGCACACCAGACAGGCCAGAAAG
Seq A exon
TTACAGATGACATGTATGCAGAGCAGACTGAGAATCCAGAGAACCCCCTGAGGTGTCCGATAAAGCTGTATGACTTCTACCTCTTCAAATG
Seq C2 exon
AAAATATGAACTACAAGATTGGCCTGGATGACTGGGGCCTCTGTCTCCTTGGAGCACGTGCAGCCTAGAGGGCACAGAATGATGGATGGACCTGCTCAGCCAGTGGAAGAGAGGCAGGCATCTTCTTTTCTTGTGCTTGGACGTTAATTTGCTGTTGTCTTGGAAGGAAGAGGAGAGAGTGAACTACAATTGTCATTTATACAAAGAAAAAAAACAAACAATGATTTCTATTCAGACCTTTAAGTGACATTTTTAGATGTTAAAAGTACAAACTTTACCACACTCTTCTTTTTTGGCCTAATACTGAGGCCTTAAACCTTGAGGCTCCTGTGCCTGATGGAATTCTTGTAACATACACTTGTGTATCATATAAAGATACCACCCTGTTTCTCTTATGTATTCTTACTCTAGTTGTTTATTAAGAATGATGAGCACGTCTTTTCAACATGCCATTGAACAATGTGTCTTTATTTGGGGAAGAGTGAGCTGTGAGGGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006867_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=0.376 C2=NA
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(30.9=100)
A:
PF120123=DUF3504=FE(18.2=100)
C2:
NA
Main Inclusion Isoform:
ENSGALT00000011121fB11184
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTATCTGAAGGCTCATGG
R:
AAGATGCCTGCCTCTCTTCCA
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]