HsaEX6055937 @ hg19
Exon Skipping
Gene
ENSG00000198218 | QRICH1
Description
glutamine-rich 1 [Source:HGNC Symbol;Acc:24713]
Coordinates
chr3:49067140-49070206:-
Coord C1 exon
chr3:49070055-49070206
Coord A exon
chr3:49069616-49069706
Coord C2 exon
chr3:49067140-49068077
Length
91 bp
Sequences
Splice sites
3' ss Seq
TGGGGATGTGTGTTTTATAGTTA
3' ss Score
5.03
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTACTTCCTATTGAAGACAGTGGACCAGCACATGAAGCTGGCCTTCTCCAAGGTCTTGCGACAGACAAAGAAGAACCCCTCTAATCCCAAGGATAAAAGCACGAGTATCCGGTACTTGAAGGCCCTTGGAATACACCAGACTGGCCAGAAAG
Seq A exon
TTACAGATGACATGTATGCAGAACAGACGGAAAATCCAGAGAATCCATTGAGATGTCCCATCAAGCTCTATGATTTCTACCTCTTCAAATG
Seq C2 exon
CCCCCAGAGTGTGAAAGGCCGGAATGACACCTTTTACCTGACACCTGAGCCAGTGGTGGCCCCCAACAGCCCAATCTGGTACTCAGTCCAGCCTATCAGCAGAGAGCAGATGGGACAAATGCTGACGCGGATCCTGGTGATAAGAGAAATTCAGGAGGCCATCGCAGTGGCCAATGCAAGCACTATGCACTGAGATGCCTTGGCCATGGCACAAGAGAAACCAGCCAGGAAAAACCAGACAGACTTTCACACTAAAGAAGAGGCCTCCATTTTTTTTTTTCTTTTTTTTATTGGTGTAGTTACGAAGCCTTTCAGGCTGCTTCTGTTTAAAATATAAAAGAAAACTTTGCCCCCTTTGCATCTTCATAAACCTGCTGCGGCAGACTCCTCAGCCGATGGTGGCTCTGGGTTTCCTTGAGTGTCATATGTCCTAGAAAGTTGCTGGCTGACTCTTTTTTGTCTGGGGCCTGGGGAAAGGGCTTGGACTGTGAAAAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198218-'25-26,'25-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.323 C2=0.000
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(30.9=100)
A:
PF120123=DUF3504=FE(18.2=100)
C2:
PF120123=DUF3504=PD(28.5=72.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATACACCAGACTGGCCA
R:
TCTTATCACCAGGATCCGCGT
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)