RnoEX0071928 @ rn6
Exon Skipping
Gene
ENSRNOG00000025071 | Qrich1
Description
glutamine-rich 1 [Source:RGD Symbol;Acc:1311095]
Coordinates
chr8:117343690-117346736:+
Coord C1 exon
chr8:117343690-117343841
Coord A exon
chr8:117344207-117344297
Coord C2 exon
chr8:117345766-117346736
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTTTTAAATAGTTA
3' ss Score
7.52
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTACTTTCTGTTGAAGACAGTAGATCAGCACATGAAGCTGGCGTTCTCCAAGGTCCTCCGGCAGACAAAGAAGAGCCCCTCGAATCCTAAGGATAAAAGCACTAGTATCCGCTACCTGAAGGCCCTCGGAATACATCAGACTGGCCAGAAAG
Seq A exon
TTACAGATGACATGTATGCAGAACAGACAGAAAATCCAGAGAACCCATTAAGGTGTCCCATCAAGCTCTACGATTTCTACCTCTTCAAATG
Seq C2 exon
CCCCCAGAGTGTGAAAGGCCGAAATGACACCTTTTACCTGACTCCTGAGCCTGTTGTGGCTCCCAACAGCCCGATCTGGTACTCAGTCCAGCCTATCAGCCGAGAGCAGATGGGACAGATGCTGACCCGGATCCTGGTTATACGAGAGATTCAAGAAGCCATTGCCGTGGCCAACGCAACCACCATGCACTGAGGTGCCTCAGCCACAGGAAAAAAAAAAATCCAGGAAAAACCAGACAGACTTTTACACTAAAGGAGAGGCCTCCATTTTTTTCTTTTTCTTTTTCCTTCAATTCGTAGTTCTAATGCTTTTCAGGCGACTTCTGTTAAAAATGTAAAAGACAATGTTGCCCTCTTTGCATCTTCATAAAATGGGCAGACCCCCTGGTTCATGGGTATATGGTTTTCCTAGAACTTGATGTCCTAGGAAGTGGTTGGCTTTTACCTTTCTTTTCCTTTTTTTTCTTTTGTCTGGGCTGGAGTGTGGGGGAAGGGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025071_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.306 C2=0.136
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(56.7=100)
A:
PF120123=DUF3504=FE(18.2=100)
C2:
PF120123=DUF3504=PD(28.5=72.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACAAAGAAGAGCCCCTC
R:
GACTGAGTACCAGATCGGGCT
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]