MmuEX6068945 @ mm10
Exon Skipping
Gene
ENSMUSG00000006673 | Qrich1
Description
glutamine-rich 1 [Source:MGI Symbol;Acc:MGI:1916482]
Coordinates
chr9:108556408-108559992:+
Coord C1 exon
chr9:108556408-108556559
Coord A exon
chr9:108556958-108557048
Coord C2 exon
chr9:108559246-108559992
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTTTCAAATAGTTA
3' ss Score
6.72
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTACTTCCTGTTGAAGACTGTAGATCAGCACATGAAGCTGGCTTTCTCTAAGGTCCTCCGACAGACAAAGAAGAGCCCCTCGAATCCTAAGGATAAAAGCACGAGCATCCGCTACCTGAAGGCCCTCGGAATACACCAGACTGGCCAGAAAG
Seq A exon
TTACAGATGACATGTATGCAGAGCAAACAGAGAATCCAGAGAATCCACTAAGGTGTCCCATCAAGCTCTACGATTTCTACCTCTTTAAATG
Seq C2 exon
CCCTCAGAGTGTGAAAGGCCGAAATGACACCTTTTACCTGACACCTGAGCCAGTTGTAGCTCCCAACAGCCCAATCTGGTACTCAGTCCAGCCTATCAGCAGAGAACAGATGGGACAGATGCTGACCCGGATCCTGGTTATACGAGAAATCCAAGAAGCCATTGCCGTGGCCAATGCAACCACCATGCACTGAGGTGCCTCAGCTATAGGAAAAAAGATCCAGGAAAAACCAGACAGACTTTCACACTAAAGGAGAGGCCTCCACATTTTTTTTTAATTTGTAGTTATGATGCTTTTCAGGCTACTTCTGTTCAAAATGTAAAAGACGATATTGCCCTCTTTGCATCTTCATAAAATGGGCAGACCCCTGGTTCATAGGGATCTGGGTTTTCTGAGAACCTGGTGTCCTAGGAAGTGGTTGGCTTTTTCTTTTCTCTTTTTTTCTTTTGTCTGGGGCGTGGGGAAAGGAACTTGGACTGTATGGAGAGATACAGACCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006673-'42-29,'42-26,44-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.312 C2=0.000
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(30.9=100)
A:
PF120123=DUF3504=FE(18.2=100)
C2:
PF120123=DUF3504=PD(28.5=72.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAGACAAAGAAGAGCCCC
R:
GATTGGGCTGTTGGGAGCTAC
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types