DreEX6091281 @ danRer10
Exon Skipping
Gene
ENSDARG00000019797 | qrich1
Description
glutamine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8204]
Coordinates
chr11:17862768-17867512:-
Coord C1 exon
chr11:17867361-17867512
Coord A exon
chr11:17863873-17863963
Coord C2 exon
chr11:17862768-17863740
Length
91 bp
Sequences
Splice sites
3' ss Seq
CATATCTTTCATTGTTCCAGTGA
3' ss Score
7.75
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTACTTTCACTTGACCACAGTGGAGCAGCATATGAAAGTGGCCTTCTCCAAAGTGCTCAGACATACAAAGAAGAATCCCACCAACCCTAAAGACAAGAGCACCAGCATCCGCTACCTGAAAGGAGTTGGACCACACCATGTCGGACAGAAAG
Seq A exon
TGACTGATGACATGTACGCAGAACAGGCTGAAGACCCCGAGAACCCGCTGCGCTGTCCCATCAAGCTCTATGACTTTTACCTCTTTAAATG
Seq C2 exon
CCCTCAGACTGCTAAGGGTCGCAATGACACGTATTACCTGACGCCGGAGCCTGTAGTGGCACCCAACAGCCCCATCTGGTACTCCACTCAGCCAATCACGAGCGAGCAACTGGAGCACATGCTAACACGCATCATGATGGTGCGGGAAATCCAAGAGATTATCTCCATCACGCAGACCAGCGTTCAATGAGAGACGACGCTTAAGGGGAAAAGGAAAGAAGTGAAAGATGGATGGATGGATCCATGGATGGATCTCCAGCGTCATCCAAACAGACTGAATTACATTTCCTCTGCGGCATCTCTTTATATTCATCCACCACTAAAAGGAGAATCAAGTGGAGTTTTGGATGAGCTGGATTACGTGCATAAAAGCCTTTTGTTTTGTTTTGTTTTTAGAGACAGGAACTTCTTTCTGTTTGTTCGCCTAATGAAACGTATTCAGATCCCAGATCCCTTGATGTGTGCATTTCTCTCTTTCTGCCATGTATGTTACGCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019797-'21-17,'21-16,22-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.355 C2=0.063
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(30.9=100)
A:
PF120123=DUF3504=FE(18.2=100)
C2:
PF120123=DUF3504=PD(28.5=73.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTGACCACAGTGGAGCAG
R:
GTGTCATTGCGACCCTTAGCA
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]