GgaEX1047565 @ galGal3
Exon Skipping
Gene
ENSGALG00000006867 | QRICH1
Description
NA
Coordinates
chr12:11893661-11895835:+
Coord C1 exon
chr12:11893661-11893812
Coord A exon
chr12:11894481-11894571
Coord C2 exon
chr12:11895372-11895835
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTGTGGGGGTTGGTTTCTAGTTA
3' ss Score
4.14
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
ATACTTCCTGTTGAAGACAGTAGACCAGCACATGAAGCTGGCCTTCTCCAAGGTATTGAGGCAGACCAAGAAGAACCCTTCCAATCCCAAGGATAAAAGCACGAGTATCCGCTATCTGAAGGCTCATGGTGCACACCAGACAGGCCAGAAAG
Seq A exon
TTACAGATGACATGTATGCAGAGCAGACTGAGAATCCAGAGAACCCCCTGAGGTGTCCGATAAAGCTGTATGACTTCTACCTCTTCAAATG
Seq C2 exon
CCCCCAGAGTGTGAAAGGCCGGAATGACACGTTTTACTTGACTCCGGAGCCAGTGGTGGCCCCCAACAGCCCTATCTGGTATTCCATCCAGCCGATCAGCAGAGAGCAGATGGAGCAGATGCTCACCCGGATCCTGGTGATACGAGAGATTCAGGAAGCTATTGCCGTGGCTAATGCCAGCACCATGCACTAAGGCATCCTTCTTGGCTCAGAAGGGGTGGGGTGGGGTGATGGGGGAGGGACAAGCAAAGAATTGTACAGACTTTTACACTAAAGGAGATGCCTAAGTTTTTGGTTTTTTATTGGTGTAGCTATGAAGCCCTTTTAGGCTTCTTCTCTTTAAAAGAATCTAAAGGAAACCTACCCATTGTGTATCCTACCCAACACACCAAACTGTTGGAATCATTGGAGGCTGCATATCCCCTGCGAACTGGGAGCTGTGGAAAGCTGCTGGTTGACTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006867-'12-13,'12-10,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.387 C2=0.000
Domain overlap (PFAM):
C1:
PF120123=DUF3504=FE(30.9=100)
A:
PF120123=DUF3504=FE(18.2=100)
C2:
PF120123=DUF3504=PD(28.5=72.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGACCAAGAAGAACCCT
R:
TACCAGATAGGGCTGTTGGGG
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]