Special

BtaEX6008555 @ bosTau6

Exon Skipping

Gene
Description
collagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
Coordinates
chr2:7139738-7222441:+
Coord C1 exon
chr2:7139738-7139855
Coord A exon
chr2:7219309-7219533
Coord C2 exon
chr2:7222428-7222441
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTTATTATTCTAGAAG
3' ss Score
8.11
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
CCACATGTCTAATATTTAGACATGATGGCAAACTGGGTGGAAGCAAGACCTCTGCTCATTCTTACTGTTTTATTAGGGCAGTTCGTCTCAATAAAAGCCCAGGAAGAAGACGAGGATG
Seq A exon
AAGGATATGGTGAAGAAATAGCCTGCACCCAGAATGGTCAGATGTACTTAAACAGGGACATTTGGAAACCTGCCCCTTGCCAGATCTGTGTCTGTGACAATGGCGCCATTCTTTGTGACAAGATTCAGTGCCAGGATGTGCTTGAGTGTGCTGACCCCGTAACTCCCCCTGGGGAATGCTGTCCTGTCTGTCCACATACAACTGGAGGTGGCAATACCAACTTTG
Seq C2 exon
GAAGAGGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027020-'0-5,'0-2,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.105 C2=0.800
Domain overlap (PFAM):

C1:
NO
A:
PF148281=Amnionless=PU(79.1=89.5),PF0009313=VWC=WD(100=73.7)
C2:
PF148281=Amnionless=FE(4.7=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]