RnoEX0023396 @ rn6
Exon Skipping
Gene
ENSRNOG00000003736 | Col5a2
Description
collagen type V alpha 2 chain [Source:RGD Symbol;Acc:70921]
Coordinates
chr9:52150882-52238564:-
Coord C1 exon
chr9:52238471-52238564
Coord A exon
chr9:52156965-52157189
Coord C2 exon
chr9:52150882-52150899
Length
225 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTTGTTTTATTTCAGATG
3' ss Score
12.1
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ATGATGGCAAACTGGGTGGTAGCAAGACCTCTCCTCATTCTTTTTGTTTTATTAGGGTACTGTGTCTCAATAAAAGCCCAGGAACAAGAGAATG
Seq A exon
ATGACTATGATGAAGAAATAGCCTGTACACAACATGGCCAGATGTATTTAAATAGAGACATTTGGAAACCTTCTCCATGCCAGATCTGTGTCTGTGACAATGGTGCTATCCTCTGTGACAAGATAGAGTGCCAAGAAGTGCTCAACTGTGCCAATCCTGTAACACCTCCTGGGGAGTGCTGCCCAGCGTGTCCACAGACATCTGGAGGTGGAGATACAAGTTTTG
Seq C2 exon
GTAGAGGAAGAAAGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003736-'0-8,'0-5,4-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.476
Domain overlap (PFAM):
C1:
NO
A:
PF0009313=VWC=WD(100=73.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]