DreEX6037974 @ danRer10
Exon Skipping
Gene
ENSDARG00000031678 | COL5A2 (2 of 2)
Description
collagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
Coordinates
chr9:42871713-42894621:-
Coord C1 exon
chr9:42894442-42894621
Coord A exon
chr9:42871845-42872063
Coord C2 exon
chr9:42871713-42871729
Length
219 bp
Sequences
Splice sites
3' ss Seq
TTTTACCTTTTTTCCCTCAGAGG
3' ss Score
10.82
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TCTGTCTTCATGGTGCAGCGATAACCTGGACTCTTTTTGTCCTTCCTCTTCCCCATTATTTGCACACAAGAACAGCTCATGTCTTTGATATGGGCATGATGATCTTTGAGCCTTATAGGACTGTCCTGTTTCTGGCTTTATCTGTGACTCTTTTACAATCCGTGAGATGCCAAGACGGTG
Seq A exon
AGGATGAGTTGAGCTGTACAGAGAACGGGCAGGTGTACACAAACAGAGACATCTGGAAACCTGAGCCATGCAGGATCTGTGTTTGTGACAGTGGAACCATCCTGTGCGATGAGGTACAATGTGATGAGGTGTCGAACTGTGCAAAGGTAGTGATCCCACCGGGAGAGTGCTGTCCGGTCTGCCAGGGCGATGCAGCTGAAGGTGGCAATGGCAGACCAG
Seq C2 exon
GAGGCAGAATCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031678-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009313=VWC=WD(100=76.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]