GgaEX1016857 @ galGal4
Exon Skipping
Gene
ENSGALG00000002509 | COL5A2
Description
collagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
Coordinates
chr7:447686-500674:+
Coord C1 exon
chr7:447686-448269
Coord A exon
chr7:498896-499120
Coord C2 exon
chr7:500661-500674
Length
225 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTCTCTCCTTACCAGGAG
3' ss Score
10.43
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
TCTGACACAGCACACACTGCTCAGCAGCAAGAAAATATCCTGCAAGTGTATTTGTAAAGAGAAAAGTTCAAGGAAGAGTGAAGCTAGCTCTGATTCGGTTATTTACCATCAATCAGATTCTTGCTTGGCAGGGAGTGGATGATTATGAGCCTGAACAAGCCGAAAAGGGGCAGGAAGAGAAGTGGAGGCAGCATTCTTCCTATTTAAAGCTGCATCCCCTGAAAAGAGCGCTTGCAGACTGCACTGGAGCTGGTGCTGAAAAAAAGGGCTCTCAGACTTTGTCCCAGGACTGATGCTGAAAGACGGAGAGATTCCCCAGCTGGCTTCATGGTGCTAAAATAACCTTCCATTCCTGCACATTTTGCTGCCCAGGAGGATACATGTCTAATAGCTAGGCATGATGGCAATCAGGGTAGAAATGAGAACTTTTTTCATCCTTGCCGCTTTATTAGGGCTATTCGTCACCATAAAAGCACAAGAAGAGGAAGATTACGATGCTG
Seq A exon
GAGAAGATGTTGAAGAGATTGCCTGCACTCAGAATGGCCAGATGTACCTGAACAGGGATATTTGGAAGCCCTCACCGTGCCAGATTTGTGTCTGTGACAACGGAGCTATTCTTTGCGATGAAATCCAGTGTCAAGATGTGTTGGAGTGTGAGAACCCACAGGTGCCCCCAGGAGAGTGCTGTCCAGTGTGTCCCCATACCGCACGTGATTTTGACCCTACCGTTG
Seq C2 exon
GCAGAGGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002509-'3-8,'3-4,4-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.113 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF0009313=VWC=WD(100=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]