HsaEX1009448 @ hg38
Exon Skipping
Gene
ENSG00000204262 | COL5A2
Description
collagen type V alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2210]
Coordinates
chr2:189104264-189179879:-
Coord C1 exon
chr2:189179508-189179879
Coord A exon
chr2:189110225-189110449
Coord C2 exon
chr2:189104264-189104277
Length
225 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTCTTATTTTAGAAG
3' ss Score
9.7
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GACCGTTGCTTGGCAGACACTGGATGGTTATGAGCCTGAACAAGCTGAAAAGGGGCAGGAAAAGAAGTGGAGGCAGCATTCTTCCTATTTAAAGCTGCATCGCTTGAAAAAAGTTTTCGCAGACTGTGCTGGAGCTGGTGCTGAAAAAGGGGGTTTGCAGAGGCTGCCCTGGGGCTGGTGCTGAAAGAAGAGCCCACAGCTGACTTCATGGTGCTACAATAACCTCAGAATCTACTTTTCACTCTCAGGAGAACCCACATGTCTAATATTTAGACATGATGGCAAACTGGGCGGAAGCAAGACCTCTCCTCATTCTTATTGTTTTATTAGGGCAATTTGTCTCAATAAAAGCCCAGGAAGAAGACGAGGATG
Seq A exon
AAGGATATGGTGAAGAAATAGCCTGCACTCAGAATGGCCAGATGTACTTAAACAGGGACATTTGGAAACCTGCCCCTTGTCAGATCTGTGTCTGTGACAATGGAGCCATTCTCTGTGACAAGATAGAATGCCAGGATGTGCTGGACTGTGCCGACCCTGTAACGCCCCCTGGGGAATGCTGTCCTGTCTGTTCACAAACACCTGGAGGTGGCAATACCAATTTTG
Seq C2 exon
GTAGAGGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204262-'1-4,'1-2,9-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.132 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
PF148281=Amnionless=WD(100=78.9),PF0009313=VWC=WD(100=73.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains