MmuEX6024042 @ mm10
Exon Skipping
Gene
ENSMUSG00000026042 | Col5a2
Description
collagen, type V, alpha 2 [Source:MGI Symbol;Acc:MGI:88458]
Coordinates
chr1:45438870-45503282:-
Coord C1 exon
chr1:45502821-45503282
Coord A exon
chr1:45442647-45442868
Coord C2 exon
chr1:45438870-45438883
Length
222 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGTTTTTATTTCAGATG
3' ss Score
11.08
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTCTCTGTTGAGAAGCTTCCTCTGTGCTTAAAATCTACAAGAAGCACTGAAAACTCAAGTCGCAGAGGCGCGCGCTCTGATTTGGTTGTTTACCATCAATCAGACGGTTGCTTGGCAGACACTGGATGGTTATGAGCCTGAACAAGCTGAAAGGGGCAGGAAAAGAAGTGGAGGCAGCATTCTTCCTATTTAAAGCTGCACCGCTTGAAAAAAGTTTTCGCAGACTGTGCCGGACCTGGTGCTGAAACAGACTGAGGCAGCGCGGGGACTGGTGCTGAAAAAGAGCCCCCAGCGGAATTCATGGTGCTACAGTGACCTCAGTATCTACTCTTCGATCCCAGGAGGACCCACATGTCTCATATTTAGACATGATGGCAAACTGGGTGGGAGCAAGACCTCTCCTCATTCTTTCTGTTTTATTAGGGTACTGTGTCTCAATAAAAGCCCAGGAACAAGAGAATG
Seq A exon
ATGAATATGATGAAGAAATAGCCTGTACTCAACATGGACAGATGTATTTAAATAGAGACATTTGGAAACCTTCTCCATGTCAGATCTGTGTCTGTGACAATGGTGCCATTCTTTGTGACAAGATAGAGTGCCCAGAGGTGCTCAACTGTGCCAATCCTATAACACCCACTGGGGAGTGCTGTCCGGTGTGCCCACAAACTGGAGGTGGAGATACTAGTTTTG
Seq C2 exon
GTAGAGGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026042-'0-6,'0-4,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.093 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF148281=Amnionless=WD(100=80.0),PF0009313=VWC=WD(100=74.7),PF0139113=Collagen=PU(8.0=9.3)
C2:
PF0139113=Collagen=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types